Strain Fitness in Serratia liquefaciens MT49 around IAI46_22050

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22040 and IAI46_22045 are separated by 417 nucleotidesIAI46_22045 and IAI46_22050 are separated by 28 nucleotidesIAI46_22050 and IAI46_22055 are separated by 111 nucleotides IAI46_22040: IAI46_22040 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 4,691,511 to 4,692,164 _22040 IAI46_22045: IAI46_22045 - ubiquinone biosynthesis accessory factor UbiK, at 4,692,582 to 4,692,860 _22045 IAI46_22050: IAI46_22050 - L-methionine/branched-chain amino acid transporter, at 4,692,889 to 4,694,142 _22050 IAI46_22055: IAI46_22055 - bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE, at 4,694,254 to 4,695,684 _22055 Position (kb) 4692 4693 4694 4695Strain fitness (log2 ratio) -2 -1 0 1 2at 4692.223 kb on - strandat 4692.227 kb on - strandat 4692.227 kb on - strandat 4692.233 kb on - strandat 4692.233 kb on - strandat 4692.298 kb on - strandat 4692.386 kb on - strandat 4692.446 kb on - strandat 4692.461 kb on - strandat 4692.515 kb on + strandat 4692.515 kb on + strandat 4692.515 kb on + strandat 4692.516 kb on - strandat 4692.516 kb on - strandat 4692.516 kb on - strandat 4692.516 kb on - strandat 4692.516 kb on - strandat 4692.520 kb on + strandat 4692.541 kb on + strandat 4692.542 kb on - strandat 4692.547 kb on - strandat 4692.557 kb on + strandat 4692.558 kb on - strandat 4692.558 kb on - strandat 4692.560 kb on + strandat 4692.561 kb on - strandat 4692.576 kb on + strandat 4692.576 kb on + strandat 4692.858 kb on + strandat 4692.858 kb on + strandat 4692.858 kb on + strandat 4692.859 kb on - strandat 4692.859 kb on - strandat 4692.863 kb on - strandat 4692.890 kb on + strandat 4692.891 kb on - strandat 4692.962 kb on + strandat 4693.068 kb on + strand, within IAI46_22050at 4693.068 kb on + strand, within IAI46_22050at 4693.068 kb on + strand, within IAI46_22050at 4693.068 kb on + strand, within IAI46_22050at 4693.068 kb on + strand, within IAI46_22050at 4693.069 kb on - strand, within IAI46_22050at 4693.079 kb on + strand, within IAI46_22050at 4693.107 kb on - strand, within IAI46_22050at 4693.140 kb on + strand, within IAI46_22050at 4693.141 kb on - strand, within IAI46_22050at 4693.141 kb on - strand, within IAI46_22050at 4693.143 kb on - strand, within IAI46_22050at 4693.143 kb on - strand, within IAI46_22050at 4693.155 kb on + strand, within IAI46_22050at 4693.155 kb on + strand, within IAI46_22050at 4693.156 kb on - strand, within IAI46_22050at 4693.284 kb on + strand, within IAI46_22050at 4693.286 kb on + strand, within IAI46_22050at 4693.286 kb on + strand, within IAI46_22050at 4693.286 kb on + strand, within IAI46_22050at 4693.286 kb on + strand, within IAI46_22050at 4693.286 kb on + strand, within IAI46_22050at 4693.286 kb on + strand, within IAI46_22050at 4693.286 kb on + strand, within IAI46_22050at 4693.287 kb on - strand, within IAI46_22050at 4693.287 kb on - strand, within IAI46_22050at 4693.287 kb on - strand, within IAI46_22050at 4693.287 kb on - strand, within IAI46_22050at 4693.290 kb on + strand, within IAI46_22050at 4693.291 kb on - strand, within IAI46_22050at 4693.291 kb on - strand, within IAI46_22050at 4693.316 kb on + strand, within IAI46_22050at 4693.321 kb on + strand, within IAI46_22050at 4693.321 kb on + strand, within IAI46_22050at 4693.321 kb on + strand, within IAI46_22050at 4693.322 kb on - strand, within IAI46_22050at 4693.322 kb on - strand, within IAI46_22050at 4693.322 kb on - strand, within IAI46_22050at 4693.409 kb on + strand, within IAI46_22050at 4693.409 kb on + strand, within IAI46_22050at 4693.438 kb on - strand, within IAI46_22050at 4693.438 kb on - strand, within IAI46_22050at 4693.438 kb on - strand, within IAI46_22050at 4693.438 kb on - strand, within IAI46_22050at 4693.449 kb on - strand, within IAI46_22050at 4693.600 kb on + strand, within IAI46_22050at 4693.601 kb on - strand, within IAI46_22050at 4693.601 kb on - strand, within IAI46_22050at 4693.704 kb on + strand, within IAI46_22050at 4693.705 kb on - strand, within IAI46_22050at 4693.758 kb on + strand, within IAI46_22050at 4693.758 kb on + strand, within IAI46_22050at 4693.758 kb on + strand, within IAI46_22050at 4693.759 kb on - strand, within IAI46_22050at 4693.759 kb on - strand, within IAI46_22050at 4693.762 kb on + strand, within IAI46_22050at 4693.826 kb on - strand, within IAI46_22050at 4693.832 kb on - strand, within IAI46_22050at 4693.832 kb on - strand, within IAI46_22050at 4693.832 kb on - strand, within IAI46_22050at 4694.096 kb on - strandat 4694.096 kb on - strandat 4694.157 kb on + strandat 4694.167 kb on - strandat 4694.167 kb on - strandat 4694.197 kb on + strandat 4694.197 kb on + strandat 4694.220 kb on + strandat 4694.232 kb on + strandat 4694.241 kb on + strandat 4694.255 kb on + strandat 4694.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,692,223 - -0.7
4,692,227 - +0.1
4,692,227 - +0.1
4,692,233 - +0.1
4,692,233 - +0.9
4,692,298 - +0.2
4,692,386 - +0.1
4,692,446 - +1.2
4,692,461 - +1.5
4,692,515 + -0.3
4,692,515 + -0.1
4,692,515 + +0.1
4,692,516 - +0.2
4,692,516 - +0.1
4,692,516 - -0.4
4,692,516 - -0.5
4,692,516 - +0.3
4,692,520 + -0.1
4,692,541 + +0.0
4,692,542 - +1.5
4,692,547 - -0.2
4,692,557 + -0.2
4,692,558 - -0.8
4,692,558 - -1.3
4,692,560 + +0.1
4,692,561 - +0.2
4,692,576 + +0.6
4,692,576 + +0.5
4,692,858 + -0.6
4,692,858 + +0.2
4,692,858 + -0.3
4,692,859 - -0.4
4,692,859 - +0.7
4,692,863 - -0.5
4,692,890 + -0.6
4,692,891 - +0.2
4,692,962 + -0.1
4,693,068 + IAI46_22050 0.14 -1.5
4,693,068 + IAI46_22050 0.14 +0.9
4,693,068 + IAI46_22050 0.14 +0.3
4,693,068 + IAI46_22050 0.14 -0.2
4,693,068 + IAI46_22050 0.14 +0.4
4,693,069 - IAI46_22050 0.14 +0.3
4,693,079 + IAI46_22050 0.15 +1.0
4,693,107 - IAI46_22050 0.17 -0.6
4,693,140 + IAI46_22050 0.20 +1.0
4,693,141 - IAI46_22050 0.20 +0.7
4,693,141 - IAI46_22050 0.20 +0.4
4,693,143 - IAI46_22050 0.20 -0.2
4,693,143 - IAI46_22050 0.20 -0.6
4,693,155 + IAI46_22050 0.21 +0.6
4,693,155 + IAI46_22050 0.21 -0.3
4,693,156 - IAI46_22050 0.21 -0.4
4,693,284 + IAI46_22050 0.31 +0.1
4,693,286 + IAI46_22050 0.32 -0.6
4,693,286 + IAI46_22050 0.32 -0.1
4,693,286 + IAI46_22050 0.32 +0.5
4,693,286 + IAI46_22050 0.32 -1.6
4,693,286 + IAI46_22050 0.32 +0.7
4,693,286 + IAI46_22050 0.32 -0.1
4,693,286 + IAI46_22050 0.32 -0.5
4,693,287 - IAI46_22050 0.32 +0.5
4,693,287 - IAI46_22050 0.32 +0.8
4,693,287 - IAI46_22050 0.32 -0.9
4,693,287 - IAI46_22050 0.32 +0.2
4,693,290 + IAI46_22050 0.32 +0.0
4,693,291 - IAI46_22050 0.32 +0.2
4,693,291 - IAI46_22050 0.32 +0.7
4,693,316 + IAI46_22050 0.34 +0.2
4,693,321 + IAI46_22050 0.34 -1.8
4,693,321 + IAI46_22050 0.34 -0.1
4,693,321 + IAI46_22050 0.34 -0.7
4,693,322 - IAI46_22050 0.35 -0.4
4,693,322 - IAI46_22050 0.35 +0.3
4,693,322 - IAI46_22050 0.35 -0.3
4,693,409 + IAI46_22050 0.41 +0.0
4,693,409 + IAI46_22050 0.41 -0.9
4,693,438 - IAI46_22050 0.44 +0.2
4,693,438 - IAI46_22050 0.44 +1.0
4,693,438 - IAI46_22050 0.44 -0.3
4,693,438 - IAI46_22050 0.44 +0.4
4,693,449 - IAI46_22050 0.45 -0.2
4,693,600 + IAI46_22050 0.57 +0.6
4,693,601 - IAI46_22050 0.57 -0.3
4,693,601 - IAI46_22050 0.57 +1.1
4,693,704 + IAI46_22050 0.65 -0.5
4,693,705 - IAI46_22050 0.65 +1.8
4,693,758 + IAI46_22050 0.69 +0.3
4,693,758 + IAI46_22050 0.69 +0.6
4,693,758 + IAI46_22050 0.69 +0.4
4,693,759 - IAI46_22050 0.69 +0.4
4,693,759 - IAI46_22050 0.69 +0.4
4,693,762 + IAI46_22050 0.70 +0.7
4,693,826 - IAI46_22050 0.75 -0.0
4,693,832 - IAI46_22050 0.75 -0.3
4,693,832 - IAI46_22050 0.75 +0.3
4,693,832 - IAI46_22050 0.75 -0.3
4,694,096 - -0.9
4,694,096 - +0.2
4,694,157 + -0.8
4,694,167 - +0.7
4,694,167 - +0.0
4,694,197 + -0.7
4,694,197 + -0.4
4,694,220 + -0.4
4,694,232 + +0.6
4,694,241 + +0.7
4,694,255 + +1.1
4,694,256 - +0.6

Or see this region's nucleotide sequence