Strain Fitness in Serratia liquefaciens MT49 around IAI46_19085

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19075 and IAI46_19080 are separated by 83 nucleotidesIAI46_19080 and IAI46_19085 overlap by 8 nucleotidesIAI46_19085 and IAI46_19090 are separated by 57 nucleotides IAI46_19075: IAI46_19075 - transcriptional regulator GutM, at 4,024,544 to 4,024,900 _19075 IAI46_19080: IAI46_19080 - DNA-binding transcriptional repressor, at 4,024,984 to 4,025,757 _19080 IAI46_19085: IAI46_19085 - arabinose-5-phosphate isomerase GutQ, at 4,025,750 to 4,026,721 _19085 IAI46_19090: IAI46_19090 - methyltransferase, at 4,026,779 to 4,027,813 _19090 Position (kb) 4025 4026 4027Strain fitness (log2 ratio) -1 0 1at 4024.891 kb on + strandat 4024.902 kb on - strandat 4024.983 kb on + strandat 4024.984 kb on - strandat 4025.200 kb on - strand, within IAI46_19080at 4025.247 kb on + strand, within IAI46_19080at 4025.247 kb on + strand, within IAI46_19080at 4025.417 kb on - strand, within IAI46_19080at 4025.518 kb on - strand, within IAI46_19080at 4025.518 kb on - strand, within IAI46_19080at 4025.590 kb on - strand, within IAI46_19080at 4025.728 kb on - strandat 4025.755 kb on + strandat 4026.041 kb on - strand, within IAI46_19085at 4026.047 kb on + strand, within IAI46_19085at 4026.101 kb on - strand, within IAI46_19085at 4026.451 kb on - strand, within IAI46_19085at 4026.493 kb on + strand, within IAI46_19085at 4026.533 kb on - strand, within IAI46_19085at 4026.634 kb on + strandat 4026.634 kb on + strandat 4026.635 kb on - strandat 4026.724 kb on - strandat 4026.764 kb on + strandat 4026.764 kb on + strandat 4026.810 kb on + strandat 4026.810 kb on + strandat 4026.826 kb on + strandat 4026.965 kb on + strand, within IAI46_19090at 4026.968 kb on + strand, within IAI46_19090at 4026.968 kb on + strand, within IAI46_19090at 4026.969 kb on - strand, within IAI46_19090at 4026.969 kb on - strand, within IAI46_19090at 4026.980 kb on - strand, within IAI46_19090at 4026.986 kb on + strand, within IAI46_19090at 4027.025 kb on + strand, within IAI46_19090at 4027.025 kb on + strand, within IAI46_19090at 4027.028 kb on + strand, within IAI46_19090at 4027.029 kb on - strand, within IAI46_19090at 4027.066 kb on + strand, within IAI46_19090at 4027.080 kb on + strand, within IAI46_19090at 4027.175 kb on + strand, within IAI46_19090at 4027.226 kb on + strand, within IAI46_19090at 4027.262 kb on - strand, within IAI46_19090at 4027.265 kb on + strand, within IAI46_19090at 4027.265 kb on + strand, within IAI46_19090at 4027.266 kb on - strand, within IAI46_19090at 4027.273 kb on + strand, within IAI46_19090at 4027.274 kb on - strand, within IAI46_19090at 4027.274 kb on - strand, within IAI46_19090at 4027.292 kb on - strand, within IAI46_19090at 4027.294 kb on - strand, within IAI46_19090at 4027.390 kb on - strand, within IAI46_19090at 4027.396 kb on - strand, within IAI46_19090at 4027.497 kb on - strand, within IAI46_19090

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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4,024,891 + +0.2
4,024,902 - +0.9
4,024,983 + +0.1
4,024,984 - +0.3
4,025,200 - IAI46_19080 0.28 +1.7
4,025,247 + IAI46_19080 0.34 -0.0
4,025,247 + IAI46_19080 0.34 +0.3
4,025,417 - IAI46_19080 0.56 +0.0
4,025,518 - IAI46_19080 0.69 +0.8
4,025,518 - IAI46_19080 0.69 +1.3
4,025,590 - IAI46_19080 0.78 -0.8
4,025,728 - +1.3
4,025,755 + +0.4
4,026,041 - IAI46_19085 0.30 +0.1
4,026,047 + IAI46_19085 0.31 -0.1
4,026,101 - IAI46_19085 0.36 -0.2
4,026,451 - IAI46_19085 0.72 -0.6
4,026,493 + IAI46_19085 0.76 +0.9
4,026,533 - IAI46_19085 0.81 -0.6
4,026,634 + +0.1
4,026,634 + -0.8
4,026,635 - +0.8
4,026,724 - -0.2
4,026,764 + +0.5
4,026,764 + -0.2
4,026,810 + +0.2
4,026,810 + -0.3
4,026,826 + +0.2
4,026,965 + IAI46_19090 0.18 -0.7
4,026,968 + IAI46_19090 0.18 -0.0
4,026,968 + IAI46_19090 0.18 -1.0
4,026,969 - IAI46_19090 0.18 +0.3
4,026,969 - IAI46_19090 0.18 -0.1
4,026,980 - IAI46_19090 0.19 -1.0
4,026,986 + IAI46_19090 0.20 +0.2
4,027,025 + IAI46_19090 0.24 -1.2
4,027,025 + IAI46_19090 0.24 +0.1
4,027,028 + IAI46_19090 0.24 +0.9
4,027,029 - IAI46_19090 0.24 -0.1
4,027,066 + IAI46_19090 0.28 +0.2
4,027,080 + IAI46_19090 0.29 -0.7
4,027,175 + IAI46_19090 0.38 -0.4
4,027,226 + IAI46_19090 0.43 -0.3
4,027,262 - IAI46_19090 0.47 +0.4
4,027,265 + IAI46_19090 0.47 +0.4
4,027,265 + IAI46_19090 0.47 +0.2
4,027,266 - IAI46_19090 0.47 +1.7
4,027,273 + IAI46_19090 0.48 +1.1
4,027,274 - IAI46_19090 0.48 +0.2
4,027,274 - IAI46_19090 0.48 -1.0
4,027,292 - IAI46_19090 0.50 -0.3
4,027,294 - IAI46_19090 0.50 +0.7
4,027,390 - IAI46_19090 0.59 +0.6
4,027,396 - IAI46_19090 0.60 +0.1
4,027,497 - IAI46_19090 0.69 -0.4

Or see this region's nucleotide sequence