Strain Fitness in Serratia liquefaciens MT49 around IAI46_17480

Experiment: dichromate 20 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_17475 and IAI46_17480 are separated by 70 nucleotidesIAI46_17480 and IAI46_17485 are separated by 2 nucleotides IAI46_17475: IAI46_17475 - RraA family protein, at 3,673,039 to 3,673,725 _17475 IAI46_17480: IAI46_17480 - MFS transporter, at 3,673,796 to 3,675,100 _17480 IAI46_17485: IAI46_17485 - zinc-binding alcohol dehydrogenase family protein, at 3,675,103 to 3,676,116 _17485 Position (kb) 3673 3674 3675 3676Strain fitness (log2 ratio) -2 -1 0 1at 3672.893 kb on + strandat 3672.910 kb on + strandat 3672.911 kb on - strandat 3672.914 kb on - strandat 3672.918 kb on + strandat 3672.918 kb on + strandat 3672.920 kb on + strandat 3672.920 kb on + strandat 3672.921 kb on - strandat 3672.922 kb on + strandat 3672.922 kb on + strandat 3672.923 kb on - strandat 3673.120 kb on - strand, within IAI46_17475at 3673.173 kb on + strand, within IAI46_17475at 3673.174 kb on - strand, within IAI46_17475at 3673.220 kb on - strand, within IAI46_17475at 3673.315 kb on + strand, within IAI46_17475at 3673.315 kb on + strand, within IAI46_17475at 3673.316 kb on - strand, within IAI46_17475at 3673.316 kb on - strand, within IAI46_17475at 3673.316 kb on - strand, within IAI46_17475at 3673.414 kb on + strand, within IAI46_17475at 3673.415 kb on - strand, within IAI46_17475at 3673.418 kb on + strand, within IAI46_17475at 3673.418 kb on + strand, within IAI46_17475at 3673.474 kb on + strand, within IAI46_17475at 3673.474 kb on + strand, within IAI46_17475at 3673.474 kb on + strand, within IAI46_17475at 3673.475 kb on - strand, within IAI46_17475at 3673.547 kb on + strand, within IAI46_17475at 3673.589 kb on + strand, within IAI46_17475at 3673.623 kb on + strand, within IAI46_17475at 3673.623 kb on + strand, within IAI46_17475at 3673.719 kb on - strandat 3673.887 kb on - strandat 3673.887 kb on - strandat 3673.889 kb on - strandat 3673.890 kb on + strandat 3673.890 kb on + strandat 3673.890 kb on + strandat 3673.890 kb on + strandat 3673.891 kb on - strandat 3673.898 kb on + strandat 3673.903 kb on - strandat 3674.032 kb on + strand, within IAI46_17480at 3674.033 kb on - strand, within IAI46_17480at 3674.033 kb on - strand, within IAI46_17480at 3674.033 kb on - strand, within IAI46_17480at 3674.033 kb on - strand, within IAI46_17480at 3674.076 kb on - strand, within IAI46_17480at 3674.089 kb on + strand, within IAI46_17480at 3674.095 kb on + strand, within IAI46_17480at 3674.096 kb on - strand, within IAI46_17480at 3674.143 kb on + strand, within IAI46_17480at 3674.143 kb on + strand, within IAI46_17480at 3674.194 kb on + strand, within IAI46_17480at 3674.194 kb on + strand, within IAI46_17480at 3674.261 kb on - strand, within IAI46_17480at 3674.374 kb on + strand, within IAI46_17480at 3674.374 kb on + strand, within IAI46_17480at 3674.520 kb on - strand, within IAI46_17480at 3674.547 kb on - strand, within IAI46_17480at 3674.547 kb on - strand, within IAI46_17480at 3674.547 kb on - strand, within IAI46_17480at 3674.610 kb on + strand, within IAI46_17480at 3674.611 kb on - strand, within IAI46_17480at 3674.657 kb on - strand, within IAI46_17480at 3674.701 kb on + strand, within IAI46_17480at 3674.701 kb on + strand, within IAI46_17480at 3674.740 kb on + strand, within IAI46_17480at 3674.796 kb on + strand, within IAI46_17480at 3674.804 kb on - strand, within IAI46_17480at 3674.804 kb on - strand, within IAI46_17480at 3674.807 kb on + strand, within IAI46_17480at 3674.808 kb on - strand, within IAI46_17480at 3674.808 kb on - strand, within IAI46_17480at 3674.848 kb on + strand, within IAI46_17480at 3674.860 kb on + strand, within IAI46_17480at 3674.861 kb on - strand, within IAI46_17480at 3674.939 kb on - strand, within IAI46_17480at 3674.949 kb on - strand, within IAI46_17480at 3674.979 kb on + strandat 3674.979 kb on + strandat 3675.025 kb on - strandat 3675.098 kb on + strandat 3675.098 kb on + strandat 3675.175 kb on - strandat 3675.186 kb on + strandat 3675.186 kb on + strandat 3675.224 kb on + strand, within IAI46_17485at 3675.229 kb on - strand, within IAI46_17485at 3675.411 kb on + strand, within IAI46_17485at 3675.412 kb on - strand, within IAI46_17485at 3675.450 kb on + strand, within IAI46_17485at 3675.599 kb on + strand, within IAI46_17485at 3675.599 kb on + strand, within IAI46_17485at 3675.600 kb on - strand, within IAI46_17485at 3675.668 kb on + strand, within IAI46_17485at 3675.675 kb on - strand, within IAI46_17485at 3675.675 kb on - strand, within IAI46_17485at 3675.675 kb on - strand, within IAI46_17485at 3675.899 kb on - strand, within IAI46_17485at 3676.020 kb on + strandat 3676.021 kb on - strandat 3676.100 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
remove
3,672,893 + +0.3
3,672,910 + +1.2
3,672,911 - -0.1
3,672,914 - -0.8
3,672,918 + +0.4
3,672,918 + +0.0
3,672,920 + -0.7
3,672,920 + -0.4
3,672,921 - -0.2
3,672,922 + +1.3
3,672,922 + -0.6
3,672,923 - +0.1
3,673,120 - IAI46_17475 0.12 +1.1
3,673,173 + IAI46_17475 0.20 +0.8
3,673,174 - IAI46_17475 0.20 +0.0
3,673,220 - IAI46_17475 0.26 -0.5
3,673,315 + IAI46_17475 0.40 -0.2
3,673,315 + IAI46_17475 0.40 +0.3
3,673,316 - IAI46_17475 0.40 +1.1
3,673,316 - IAI46_17475 0.40 +0.4
3,673,316 - IAI46_17475 0.40 +0.8
3,673,414 + IAI46_17475 0.55 +0.6
3,673,415 - IAI46_17475 0.55 -0.8
3,673,418 + IAI46_17475 0.55 +0.4
3,673,418 + IAI46_17475 0.55 +0.6
3,673,474 + IAI46_17475 0.63 +0.2
3,673,474 + IAI46_17475 0.63 -0.1
3,673,474 + IAI46_17475 0.63 +0.1
3,673,475 - IAI46_17475 0.63 +0.0
3,673,547 + IAI46_17475 0.74 -0.3
3,673,589 + IAI46_17475 0.80 +0.5
3,673,623 + IAI46_17475 0.85 -0.0
3,673,623 + IAI46_17475 0.85 +1.3
3,673,719 - -1.8
3,673,887 - +1.2
3,673,887 - -0.2
3,673,889 - +0.4
3,673,890 + +1.1
3,673,890 + -0.0
3,673,890 + +0.7
3,673,890 + -0.5
3,673,891 - -0.1
3,673,898 + +0.0
3,673,903 - -0.1
3,674,032 + IAI46_17480 0.18 -0.2
3,674,033 - IAI46_17480 0.18 -0.7
3,674,033 - IAI46_17480 0.18 +0.4
3,674,033 - IAI46_17480 0.18 +0.3
3,674,033 - IAI46_17480 0.18 +0.0
3,674,076 - IAI46_17480 0.21 -0.4
3,674,089 + IAI46_17480 0.22 +0.1
3,674,095 + IAI46_17480 0.23 -0.1
3,674,096 - IAI46_17480 0.23 -0.7
3,674,143 + IAI46_17480 0.27 +1.1
3,674,143 + IAI46_17480 0.27 +0.3
3,674,194 + IAI46_17480 0.30 +0.5
3,674,194 + IAI46_17480 0.30 -0.2
3,674,261 - IAI46_17480 0.36 +0.5
3,674,374 + IAI46_17480 0.44 -0.1
3,674,374 + IAI46_17480 0.44 +0.4
3,674,520 - IAI46_17480 0.55 +0.2
3,674,547 - IAI46_17480 0.58 -1.1
3,674,547 - IAI46_17480 0.58 -0.1
3,674,547 - IAI46_17480 0.58 +0.1
3,674,610 + IAI46_17480 0.62 -0.4
3,674,611 - IAI46_17480 0.62 -0.0
3,674,657 - IAI46_17480 0.66 +0.3
3,674,701 + IAI46_17480 0.69 +0.4
3,674,701 + IAI46_17480 0.69 -0.1
3,674,740 + IAI46_17480 0.72 -0.7
3,674,796 + IAI46_17480 0.77 +0.6
3,674,804 - IAI46_17480 0.77 +0.8
3,674,804 - IAI46_17480 0.77 -0.3
3,674,807 + IAI46_17480 0.77 -0.4
3,674,808 - IAI46_17480 0.78 +0.0
3,674,808 - IAI46_17480 0.78 +0.3
3,674,848 + IAI46_17480 0.81 +0.3
3,674,860 + IAI46_17480 0.82 +0.2
3,674,861 - IAI46_17480 0.82 +0.4
3,674,939 - IAI46_17480 0.88 -1.0
3,674,949 - IAI46_17480 0.88 -0.4
3,674,979 + +0.2
3,674,979 + -0.0
3,675,025 - +0.7
3,675,098 + +0.0
3,675,098 + +0.9
3,675,175 - +0.4
3,675,186 + -1.9
3,675,186 + +0.1
3,675,224 + IAI46_17485 0.12 +0.4
3,675,229 - IAI46_17485 0.12 +1.1
3,675,411 + IAI46_17485 0.30 -0.3
3,675,412 - IAI46_17485 0.30 +0.5
3,675,450 + IAI46_17485 0.34 +0.9
3,675,599 + IAI46_17485 0.49 +0.3
3,675,599 + IAI46_17485 0.49 +0.5
3,675,600 - IAI46_17485 0.49 +0.3
3,675,668 + IAI46_17485 0.56 +0.2
3,675,675 - IAI46_17485 0.56 +0.2
3,675,675 - IAI46_17485 0.56 -1.3
3,675,675 - IAI46_17485 0.56 +0.5
3,675,899 - IAI46_17485 0.79 +0.2
3,676,020 + -1.2
3,676,021 - -0.3
3,676,100 + -0.0

Or see this region's nucleotide sequence