Strain Fitness in Serratia liquefaciens MT49 around IAI46_17365

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17360 and IAI46_17365 are separated by 304 nucleotidesIAI46_17365 and IAI46_17370 are separated by 9 nucleotides IAI46_17360: IAI46_17360 - nucleoid-associated protein YejK, at 3,648,205 to 3,649,215 _17360 IAI46_17365: IAI46_17365 - YejL family protein, at 3,649,520 to 3,649,747 _17365 IAI46_17370: IAI46_17370 - DUF3413 domain-containing protein, at 3,649,757 to 3,651,538 _17370 Position (kb) 3649 3650Strain fitness (log2 ratio) -1 0 1 2at 3648.530 kb on + strand, within IAI46_17360at 3648.530 kb on + strand, within IAI46_17360at 3648.536 kb on + strand, within IAI46_17360at 3648.613 kb on + strand, within IAI46_17360at 3648.814 kb on - strand, within IAI46_17360at 3648.868 kb on + strand, within IAI46_17360at 3648.868 kb on + strand, within IAI46_17360at 3648.873 kb on - strand, within IAI46_17360at 3648.873 kb on - strand, within IAI46_17360at 3649.077 kb on - strand, within IAI46_17360at 3649.077 kb on - strand, within IAI46_17360at 3649.218 kb on + strandat 3649.219 kb on - strandat 3649.236 kb on + strandat 3649.244 kb on - strandat 3649.307 kb on + strandat 3649.307 kb on + strandat 3649.310 kb on - strandat 3649.310 kb on - strandat 3649.310 kb on - strandat 3649.325 kb on - strandat 3649.333 kb on + strandat 3649.355 kb on + strandat 3649.355 kb on + strandat 3649.355 kb on + strandat 3649.356 kb on - strandat 3649.358 kb on + strandat 3649.359 kb on - strandat 3649.365 kb on + strandat 3649.365 kb on + strandat 3649.367 kb on + strandat 3649.367 kb on + strandat 3649.367 kb on + strandat 3649.367 kb on + strandat 3649.368 kb on - strandat 3649.368 kb on - strandat 3649.396 kb on - strandat 3649.423 kb on + strandat 3649.423 kb on + strandat 3649.579 kb on + strand, within IAI46_17365at 3650.438 kb on + strand, within IAI46_17370at 3650.497 kb on + strand, within IAI46_17370at 3650.511 kb on - strand, within IAI46_17370at 3650.533 kb on + strand, within IAI46_17370at 3650.562 kb on + strand, within IAI46_17370at 3650.575 kb on + strand, within IAI46_17370at 3650.575 kb on + strand, within IAI46_17370at 3650.629 kb on + strand, within IAI46_17370at 3650.684 kb on + strand, within IAI46_17370

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,648,530 + IAI46_17360 0.32 -1.1
3,648,530 + IAI46_17360 0.32 +0.8
3,648,536 + IAI46_17360 0.33 -0.4
3,648,613 + IAI46_17360 0.40 -0.2
3,648,814 - IAI46_17360 0.60 +0.5
3,648,868 + IAI46_17360 0.66 -0.5
3,648,868 + IAI46_17360 0.66 +1.2
3,648,873 - IAI46_17360 0.66 -0.5
3,648,873 - IAI46_17360 0.66 +0.1
3,649,077 - IAI46_17360 0.86 -0.6
3,649,077 - IAI46_17360 0.86 +0.5
3,649,218 + -1.1
3,649,219 - +1.1
3,649,236 + -0.2
3,649,244 - +0.4
3,649,307 + -0.2
3,649,307 + -0.3
3,649,310 - -0.6
3,649,310 - -0.5
3,649,310 - +0.3
3,649,325 - +0.6
3,649,333 + +0.7
3,649,355 + +0.2
3,649,355 + +1.0
3,649,355 + -0.5
3,649,356 - +0.8
3,649,358 + -0.1
3,649,359 - -0.2
3,649,365 + +0.6
3,649,365 + +0.6
3,649,367 + +0.1
3,649,367 + -0.0
3,649,367 + -1.0
3,649,367 + -0.1
3,649,368 - +1.8
3,649,368 - -1.2
3,649,396 - -0.6
3,649,423 + +0.0
3,649,423 + -0.2
3,649,579 + IAI46_17365 0.26 +0.3
3,650,438 + IAI46_17370 0.38 -0.3
3,650,497 + IAI46_17370 0.42 -1.7
3,650,511 - IAI46_17370 0.42 -0.5
3,650,533 + IAI46_17370 0.44 -1.5
3,650,562 + IAI46_17370 0.45 +1.1
3,650,575 + IAI46_17370 0.46 -1.3
3,650,575 + IAI46_17370 0.46 +0.4
3,650,629 + IAI46_17370 0.49 +0.9
3,650,684 + IAI46_17370 0.52 +0.5

Or see this region's nucleotide sequence