Strain Fitness in Serratia liquefaciens MT49 around IAI46_16840

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16830 and IAI46_16835 are separated by 33 nucleotidesIAI46_16835 and IAI46_16840 are separated by 157 nucleotidesIAI46_16840 and IAI46_16845 are separated by 87 nucleotides IAI46_16830: IAI46_16830 - helix-turn-helix transcriptional regulator, at 3,529,386 to 3,529,955 _16830 IAI46_16835: IAI46_16835 - DUF2623 family protein, at 3,529,989 to 3,530,276 _16835 IAI46_16840: IAI46_16840 - nitroreductase family protein, at 3,530,434 to 3,531,021 _16840 IAI46_16845: IAI46_16845 - LysR family transcriptional regulator, at 3,531,109 to 3,531,990 _16845 Position (kb) 3530 3531 3532Strain fitness (log2 ratio) -1 0 1at 3529.511 kb on + strand, within IAI46_16830at 3529.511 kb on + strand, within IAI46_16830at 3529.532 kb on + strand, within IAI46_16830at 3529.634 kb on + strand, within IAI46_16830at 3529.675 kb on - strand, within IAI46_16830at 3529.926 kb on + strandat 3529.926 kb on + strandat 3529.946 kb on + strandat 3529.947 kb on - strandat 3529.947 kb on - strandat 3529.985 kb on - strandat 3530.020 kb on + strand, within IAI46_16835at 3530.086 kb on + strand, within IAI46_16835at 3530.170 kb on - strand, within IAI46_16835at 3530.186 kb on - strand, within IAI46_16835at 3530.278 kb on + strandat 3530.278 kb on + strandat 3530.278 kb on + strandat 3530.345 kb on + strandat 3530.345 kb on + strandat 3530.345 kb on + strandat 3530.369 kb on - strandat 3530.369 kb on - strandat 3530.573 kb on + strand, within IAI46_16840at 3530.573 kb on + strand, within IAI46_16840at 3530.574 kb on - strand, within IAI46_16840at 3530.574 kb on - strand, within IAI46_16840at 3530.577 kb on + strand, within IAI46_16840at 3530.819 kb on + strand, within IAI46_16840at 3530.850 kb on + strand, within IAI46_16840at 3530.851 kb on - strand, within IAI46_16840at 3530.851 kb on - strand, within IAI46_16840at 3530.877 kb on + strand, within IAI46_16840at 3530.938 kb on - strand, within IAI46_16840at 3531.064 kb on - strandat 3531.093 kb on + strandat 3531.246 kb on + strand, within IAI46_16845at 3531.321 kb on - strand, within IAI46_16845at 3531.335 kb on + strand, within IAI46_16845at 3531.336 kb on - strand, within IAI46_16845at 3531.336 kb on - strand, within IAI46_16845at 3531.558 kb on + strand, within IAI46_16845at 3531.559 kb on - strand, within IAI46_16845at 3531.568 kb on + strand, within IAI46_16845at 3531.627 kb on - strand, within IAI46_16845at 3531.636 kb on - strand, within IAI46_16845at 3531.871 kb on + strand, within IAI46_16845at 3531.871 kb on + strand, within IAI46_16845

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,529,511 + IAI46_16830 0.22 +0.2
3,529,511 + IAI46_16830 0.22 +0.6
3,529,532 + IAI46_16830 0.26 -0.7
3,529,634 + IAI46_16830 0.44 +0.4
3,529,675 - IAI46_16830 0.51 +0.1
3,529,926 + +0.3
3,529,926 + +0.4
3,529,946 + +1.1
3,529,947 - -0.0
3,529,947 - -0.5
3,529,985 - -1.0
3,530,020 + IAI46_16835 0.11 -0.6
3,530,086 + IAI46_16835 0.34 -0.1
3,530,170 - IAI46_16835 0.63 +0.7
3,530,186 - IAI46_16835 0.68 +0.8
3,530,278 + +0.7
3,530,278 + -0.9
3,530,278 + -1.5
3,530,345 + +0.1
3,530,345 + -0.0
3,530,345 + -0.2
3,530,369 - +0.7
3,530,369 - -0.3
3,530,573 + IAI46_16840 0.24 -0.1
3,530,573 + IAI46_16840 0.24 +0.3
3,530,574 - IAI46_16840 0.24 -0.1
3,530,574 - IAI46_16840 0.24 +0.1
3,530,577 + IAI46_16840 0.24 +0.6
3,530,819 + IAI46_16840 0.65 +0.9
3,530,850 + IAI46_16840 0.71 -0.6
3,530,851 - IAI46_16840 0.71 -0.3
3,530,851 - IAI46_16840 0.71 -0.4
3,530,877 + IAI46_16840 0.75 +0.2
3,530,938 - IAI46_16840 0.86 +0.5
3,531,064 - -1.7
3,531,093 + +0.2
3,531,246 + IAI46_16845 0.16 +0.0
3,531,321 - IAI46_16845 0.24 +0.9
3,531,335 + IAI46_16845 0.26 +0.2
3,531,336 - IAI46_16845 0.26 +0.4
3,531,336 - IAI46_16845 0.26 -0.6
3,531,558 + IAI46_16845 0.51 -0.3
3,531,559 - IAI46_16845 0.51 +0.6
3,531,568 + IAI46_16845 0.52 +0.3
3,531,627 - IAI46_16845 0.59 +0.1
3,531,636 - IAI46_16845 0.60 +0.3
3,531,871 + IAI46_16845 0.86 +0.3
3,531,871 + IAI46_16845 0.86 +0.4

Or see this region's nucleotide sequence