Strain Fitness in Serratia liquefaciens MT49 around IAI46_16225

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16220 and IAI46_16225 are separated by 199 nucleotidesIAI46_16225 and IAI46_16230 are separated by 513 nucleotides IAI46_16220: IAI46_16220 - magnesium-translocating P-type ATPase, at 3,397,540 to 3,400,239 _16220 IAI46_16225: IAI46_16225 - MgtC family protein, at 3,400,439 to 3,401,137 _16225 IAI46_16230: IAI46_16230 - glycoside hydrolase, at 3,401,651 to 3,403,834 _16230 Position (kb) 3400 3401 3402Strain fitness (log2 ratio) -2 -1 0 1at 3399.455 kb on + strand, within IAI46_16220at 3399.456 kb on - strand, within IAI46_16220at 3399.600 kb on + strand, within IAI46_16220at 3399.609 kb on - strand, within IAI46_16220at 3399.655 kb on - strand, within IAI46_16220at 3399.695 kb on - strand, within IAI46_16220at 3399.721 kb on - strand, within IAI46_16220at 3399.780 kb on - strand, within IAI46_16220at 3399.780 kb on - strand, within IAI46_16220at 3399.956 kb on + strand, within IAI46_16220at 3399.994 kb on + strandat 3399.994 kb on + strandat 3399.994 kb on + strandat 3399.994 kb on + strandat 3399.995 kb on - strandat 3399.995 kb on - strandat 3399.998 kb on + strandat 3399.999 kb on - strandat 3400.003 kb on - strandat 3400.015 kb on - strandat 3400.015 kb on - strandat 3400.064 kb on - strandat 3400.072 kb on - strandat 3400.123 kb on - strandat 3400.216 kb on + strandat 3400.228 kb on - strandat 3400.232 kb on + strandat 3400.232 kb on + strandat 3400.240 kb on - strandat 3400.240 kb on - strandat 3400.344 kb on + strandat 3400.407 kb on - strandat 3400.430 kb on - strandat 3400.438 kb on - strandat 3400.632 kb on - strand, within IAI46_16225at 3400.632 kb on - strand, within IAI46_16225at 3400.640 kb on + strand, within IAI46_16225at 3400.815 kb on + strand, within IAI46_16225at 3400.876 kb on + strand, within IAI46_16225at 3401.131 kb on + strandat 3401.227 kb on + strandat 3401.229 kb on + strandat 3401.270 kb on - strandat 3401.390 kb on - strandat 3401.419 kb on - strandat 3401.423 kb on - strandat 3401.480 kb on - strandat 3401.481 kb on + strandat 3401.502 kb on + strandat 3401.567 kb on - strandat 3401.573 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,399,455 + IAI46_16220 0.71 +0.7
3,399,456 - IAI46_16220 0.71 -0.3
3,399,600 + IAI46_16220 0.76 +0.7
3,399,609 - IAI46_16220 0.77 -0.1
3,399,655 - IAI46_16220 0.78 -0.3
3,399,695 - IAI46_16220 0.80 -0.0
3,399,721 - IAI46_16220 0.81 +0.3
3,399,780 - IAI46_16220 0.83 +1.1
3,399,780 - IAI46_16220 0.83 +0.4
3,399,956 + IAI46_16220 0.89 +0.3
3,399,994 + -0.3
3,399,994 + +0.0
3,399,994 + +0.4
3,399,994 + -0.1
3,399,995 - +0.8
3,399,995 - +0.3
3,399,998 + +0.8
3,399,999 - +0.8
3,400,003 - +0.0
3,400,015 - -0.4
3,400,015 - +0.5
3,400,064 - +0.9
3,400,072 - +0.2
3,400,123 - +0.6
3,400,216 + -0.0
3,400,228 - +0.1
3,400,232 + -2.1
3,400,232 + +0.3
3,400,240 - -0.8
3,400,240 - -0.4
3,400,344 + -0.0
3,400,407 - -0.5
3,400,430 - -0.1
3,400,438 - -0.3
3,400,632 - IAI46_16225 0.28 -0.1
3,400,632 - IAI46_16225 0.28 -0.1
3,400,640 + IAI46_16225 0.29 -0.1
3,400,815 + IAI46_16225 0.54 -1.3
3,400,876 + IAI46_16225 0.63 +0.1
3,401,131 + -0.6
3,401,227 + +1.6
3,401,229 + -1.1
3,401,270 - +0.8
3,401,390 - +1.6
3,401,419 - -0.7
3,401,423 - -0.0
3,401,480 - +0.6
3,401,481 + -0.8
3,401,502 + -0.7
3,401,567 - -0.3
3,401,573 + +0.3

Or see this region's nucleotide sequence