Strain Fitness in Serratia liquefaciens MT49 around IAI46_16020

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16015 and IAI46_16020 overlap by 1 nucleotidesIAI46_16020 and IAI46_16025 are separated by 28 nucleotides IAI46_16015: IAI46_16015 - chemotaxis response regulator protein-glutamate methylesterase, at 3,358,193 to 3,359,242 _16015 IAI46_16020: IAI46_16020 - protein-glutamate O-methyltransferase CheR, at 3,359,242 to 3,360,114 _16020 IAI46_16025: IAI46_16025 - Tar ligand binding domain-containing protein, at 3,360,143 to 3,361,768 _16025 Position (kb) 3359 3360 3361Strain fitness (log2 ratio) -1 0 1 2at 3358.343 kb on - strand, within IAI46_16015at 3358.345 kb on - strand, within IAI46_16015at 3358.434 kb on + strand, within IAI46_16015at 3358.516 kb on - strand, within IAI46_16015at 3358.566 kb on + strand, within IAI46_16015at 3358.566 kb on + strand, within IAI46_16015at 3358.567 kb on - strand, within IAI46_16015at 3358.673 kb on - strand, within IAI46_16015at 3358.673 kb on - strand, within IAI46_16015at 3358.795 kb on + strand, within IAI46_16015at 3358.887 kb on + strand, within IAI46_16015at 3359.217 kb on - strandat 3359.225 kb on + strandat 3359.243 kb on + strandat 3359.403 kb on - strand, within IAI46_16020at 3359.403 kb on - strand, within IAI46_16020at 3359.556 kb on - strand, within IAI46_16020at 3359.584 kb on - strand, within IAI46_16020at 3359.603 kb on + strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.696 kb on - strand, within IAI46_16020at 3359.749 kb on + strand, within IAI46_16020at 3359.874 kb on + strand, within IAI46_16020at 3359.952 kb on + strand, within IAI46_16020at 3359.954 kb on + strand, within IAI46_16020at 3359.955 kb on - strand, within IAI46_16020at 3360.173 kb on + strandat 3360.220 kb on + strandat 3360.221 kb on - strandat 3360.240 kb on - strandat 3360.568 kb on + strand, within IAI46_16025at 3361.050 kb on + strand, within IAI46_16025at 3361.108 kb on + strand, within IAI46_16025

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,358,343 - IAI46_16015 0.14 +0.0
3,358,345 - IAI46_16015 0.14 +0.8
3,358,434 + IAI46_16015 0.23 -0.5
3,358,516 - IAI46_16015 0.31 -0.4
3,358,566 + IAI46_16015 0.36 -0.2
3,358,566 + IAI46_16015 0.36 +1.3
3,358,567 - IAI46_16015 0.36 -0.2
3,358,673 - IAI46_16015 0.46 -0.4
3,358,673 - IAI46_16015 0.46 -0.2
3,358,795 + IAI46_16015 0.57 -0.8
3,358,887 + IAI46_16015 0.66 +0.3
3,359,217 - -1.5
3,359,225 + +2.0
3,359,243 + +0.7
3,359,403 - IAI46_16020 0.18 +0.2
3,359,403 - IAI46_16020 0.18 +0.3
3,359,556 - IAI46_16020 0.36 +0.3
3,359,584 - IAI46_16020 0.39 -0.1
3,359,603 + IAI46_16020 0.41 +0.4
3,359,696 - IAI46_16020 0.52 +0.5
3,359,696 - IAI46_16020 0.52 -0.1
3,359,696 - IAI46_16020 0.52 +0.5
3,359,749 + IAI46_16020 0.58 +1.3
3,359,874 + IAI46_16020 0.72 +0.1
3,359,952 + IAI46_16020 0.81 -1.0
3,359,954 + IAI46_16020 0.82 -0.2
3,359,955 - IAI46_16020 0.82 +0.3
3,360,173 + +0.5
3,360,220 + +0.8
3,360,221 - +0.4
3,360,240 - -0.4
3,360,568 + IAI46_16025 0.26 +0.2
3,361,050 + IAI46_16025 0.56 +0.0
3,361,108 + IAI46_16025 0.59 +0.3

Or see this region's nucleotide sequence