Strain Fitness in Serratia liquefaciens MT49 around IAI46_15570

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15560 and IAI46_15565 are separated by 139 nucleotidesIAI46_15565 and IAI46_15570 overlap by 11 nucleotidesIAI46_15570 and IAI46_15575 are separated by 4 nucleotides IAI46_15560: IAI46_15560 - glycosyltransferase family 2 protein, at 3,260,614 to 3,261,519 _15560 IAI46_15565: IAI46_15565 - glycosyltransferase, at 3,261,659 to 3,262,507 _15565 IAI46_15570: IAI46_15570 - flippase, at 3,262,497 to 3,263,786 _15570 IAI46_15575: IAI46_15575 - polysaccharide biosynthesis tyrosine autokinase, at 3,263,791 to 3,265,971 _15575 Position (kb) 3262 3263 3264Strain fitness (log2 ratio) -2 -1 0 1 2at 3261.535 kb on + strandat 3261.660 kb on + strandat 3261.788 kb on + strand, within IAI46_15565at 3261.792 kb on + strand, within IAI46_15565at 3261.793 kb on - strand, within IAI46_15565at 3262.069 kb on + strand, within IAI46_15565at 3262.070 kb on - strand, within IAI46_15565at 3262.077 kb on + strand, within IAI46_15565at 3262.078 kb on - strand, within IAI46_15565at 3262.148 kb on - strand, within IAI46_15565at 3262.309 kb on + strand, within IAI46_15565at 3262.326 kb on + strand, within IAI46_15565at 3262.331 kb on - strand, within IAI46_15565at 3262.345 kb on + strand, within IAI46_15565at 3262.348 kb on - strand, within IAI46_15565at 3262.363 kb on - strand, within IAI46_15565at 3262.392 kb on + strand, within IAI46_15565at 3262.393 kb on - strand, within IAI46_15565at 3262.406 kb on - strand, within IAI46_15565at 3262.445 kb on + strandat 3262.455 kb on + strandat 3262.456 kb on - strandat 3262.475 kb on - strandat 3262.507 kb on + strandat 3262.602 kb on + strandat 3262.675 kb on - strand, within IAI46_15570at 3262.719 kb on + strand, within IAI46_15570at 3262.834 kb on + strand, within IAI46_15570at 3262.887 kb on + strand, within IAI46_15570at 3262.888 kb on - strand, within IAI46_15570at 3262.888 kb on - strand, within IAI46_15570at 3262.890 kb on + strand, within IAI46_15570at 3262.890 kb on + strand, within IAI46_15570at 3262.924 kb on + strand, within IAI46_15570at 3262.924 kb on + strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.995 kb on - strand, within IAI46_15570at 3263.078 kb on - strand, within IAI46_15570at 3263.081 kb on + strand, within IAI46_15570at 3263.108 kb on + strand, within IAI46_15570at 3263.109 kb on - strand, within IAI46_15570at 3263.110 kb on + strand, within IAI46_15570at 3263.110 kb on + strand, within IAI46_15570at 3263.111 kb on - strand, within IAI46_15570at 3263.272 kb on + strand, within IAI46_15570at 3263.273 kb on - strand, within IAI46_15570at 3263.273 kb on - strand, within IAI46_15570at 3263.396 kb on - strand, within IAI46_15570at 3263.408 kb on - strand, within IAI46_15570at 3263.428 kb on + strand, within IAI46_15570at 3263.429 kb on - strand, within IAI46_15570at 3263.787 kb on - strandat 3263.831 kb on + strandat 3263.832 kb on - strandat 3263.834 kb on + strandat 3263.835 kb on - strandat 3263.886 kb on + strandat 3264.204 kb on + strand, within IAI46_15575at 3264.204 kb on + strand, within IAI46_15575at 3264.204 kb on + strand, within IAI46_15575at 3264.205 kb on - strand, within IAI46_15575at 3264.205 kb on - strand, within IAI46_15575at 3264.375 kb on + strand, within IAI46_15575at 3264.376 kb on - strand, within IAI46_15575at 3264.560 kb on + strand, within IAI46_15575at 3264.561 kb on - strand, within IAI46_15575

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,261,535 + +0.4
3,261,660 + +0.5
3,261,788 + IAI46_15565 0.15 +1.0
3,261,792 + IAI46_15565 0.16 +0.9
3,261,793 - IAI46_15565 0.16 +0.5
3,262,069 + IAI46_15565 0.48 +0.4
3,262,070 - IAI46_15565 0.48 -0.7
3,262,077 + IAI46_15565 0.49 +0.6
3,262,078 - IAI46_15565 0.49 -0.8
3,262,148 - IAI46_15565 0.58 -0.1
3,262,309 + IAI46_15565 0.77 -0.1
3,262,326 + IAI46_15565 0.79 -0.6
3,262,331 - IAI46_15565 0.79 +1.2
3,262,345 + IAI46_15565 0.81 +0.5
3,262,348 - IAI46_15565 0.81 +0.1
3,262,363 - IAI46_15565 0.83 -0.0
3,262,392 + IAI46_15565 0.86 -0.4
3,262,393 - IAI46_15565 0.86 +0.7
3,262,406 - IAI46_15565 0.88 -0.4
3,262,445 + -0.2
3,262,455 + +0.1
3,262,456 - -0.1
3,262,475 - -0.9
3,262,507 + +1.0
3,262,602 + -0.4
3,262,675 - IAI46_15570 0.14 -0.1
3,262,719 + IAI46_15570 0.17 -0.2
3,262,834 + IAI46_15570 0.26 -1.8
3,262,887 + IAI46_15570 0.30 -1.0
3,262,888 - IAI46_15570 0.30 -0.7
3,262,888 - IAI46_15570 0.30 +0.6
3,262,890 + IAI46_15570 0.30 +1.8
3,262,890 + IAI46_15570 0.30 +1.2
3,262,924 + IAI46_15570 0.33 +0.5
3,262,924 + IAI46_15570 0.33 +0.5
3,262,925 - IAI46_15570 0.33 -0.4
3,262,925 - IAI46_15570 0.33 -0.6
3,262,925 - IAI46_15570 0.33 -1.4
3,262,925 - IAI46_15570 0.33 -0.8
3,262,925 - IAI46_15570 0.33 +0.4
3,262,995 - IAI46_15570 0.39 +0.5
3,263,078 - IAI46_15570 0.45 +0.4
3,263,081 + IAI46_15570 0.45 +0.5
3,263,108 + IAI46_15570 0.47 +1.1
3,263,109 - IAI46_15570 0.47 +0.3
3,263,110 + IAI46_15570 0.48 -0.3
3,263,110 + IAI46_15570 0.48 -0.9
3,263,111 - IAI46_15570 0.48 +0.1
3,263,272 + IAI46_15570 0.60 +0.5
3,263,273 - IAI46_15570 0.60 +1.1
3,263,273 - IAI46_15570 0.60 +0.9
3,263,396 - IAI46_15570 0.70 -0.8
3,263,408 - IAI46_15570 0.71 -0.3
3,263,428 + IAI46_15570 0.72 +0.4
3,263,429 - IAI46_15570 0.72 +0.7
3,263,787 - -0.3
3,263,831 + +0.4
3,263,832 - +0.5
3,263,834 + +0.1
3,263,835 - +0.4
3,263,886 + +0.0
3,264,204 + IAI46_15575 0.19 -0.9
3,264,204 + IAI46_15575 0.19 +0.4
3,264,204 + IAI46_15575 0.19 -0.1
3,264,205 - IAI46_15575 0.19 -0.4
3,264,205 - IAI46_15575 0.19 -0.2
3,264,375 + IAI46_15575 0.27 +0.2
3,264,376 - IAI46_15575 0.27 +1.4
3,264,560 + IAI46_15575 0.35 -2.3
3,264,561 - IAI46_15575 0.35 +0.7

Or see this region's nucleotide sequence