Strain Fitness in Serratia liquefaciens MT49 around IAI46_15150

Experiment: dichromate 20 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_15140 and IAI46_15145 overlap by 1 nucleotidesIAI46_15145 and IAI46_15150 are separated by 1 nucleotidesIAI46_15150 and IAI46_15155 are separated by 1 nucleotidesIAI46_15155 and IAI46_15160 overlap by 4 nucleotidesIAI46_15160 and IAI46_15165 are separated by 1 nucleotidesIAI46_15165 and IAI46_15170 overlap by 1 nucleotides IAI46_15140: IAI46_15140 - phage N-6-adenine-methyltransferase, at 3,184,780 to 3,185,328 _15140 IAI46_15145: IAI46_15145 - recombination protein NinB, at 3,185,328 to 3,185,795 _15145 IAI46_15150: IAI46_15150 - hypothetical protein, at 3,185,797 to 3,186,009 _15150 IAI46_15155: IAI46_15155 - hypothetical protein, at 3,186,011 to 3,186,457 _15155 IAI46_15160: IAI46_15160 - hypothetical protein, at 3,186,454 to 3,186,621 _15160 IAI46_15165: IAI46_15165 - hypothetical protein, at 3,186,623 to 3,186,901 _15165 IAI46_15170: IAI46_15170 - hypothetical protein, at 3,186,901 to 3,187,089 _15170 Position (kb) 3185 3186 3187Strain fitness (log2 ratio) -1 0 1at 3184.824 kb on + strandat 3184.824 kb on + strandat 3184.825 kb on - strandat 3184.940 kb on - strand, within IAI46_15140at 3184.948 kb on + strand, within IAI46_15140at 3184.950 kb on + strand, within IAI46_15140at 3184.951 kb on - strand, within IAI46_15140at 3184.951 kb on - strand, within IAI46_15140at 3184.951 kb on - strand, within IAI46_15140at 3185.055 kb on + strand, within IAI46_15140at 3185.056 kb on - strand, within IAI46_15140at 3185.100 kb on + strand, within IAI46_15140at 3185.102 kb on + strand, within IAI46_15140at 3185.103 kb on - strand, within IAI46_15140at 3185.123 kb on + strand, within IAI46_15140at 3185.124 kb on - strand, within IAI46_15140at 3185.258 kb on + strand, within IAI46_15140at 3185.258 kb on + strand, within IAI46_15140at 3185.259 kb on - strand, within IAI46_15140at 3185.266 kb on + strand, within IAI46_15140at 3185.282 kb on - strandat 3185.290 kb on + strandat 3185.330 kb on - strandat 3185.434 kb on + strand, within IAI46_15145at 3185.597 kb on - strand, within IAI46_15145at 3185.678 kb on + strand, within IAI46_15145at 3185.679 kb on - strand, within IAI46_15145at 3185.689 kb on - strand, within IAI46_15145at 3185.689 kb on - strand, within IAI46_15145at 3185.782 kb on - strandat 3185.810 kb on - strandat 3185.970 kb on - strand, within IAI46_15150at 3185.980 kb on + strand, within IAI46_15150at 3186.009 kb on + strandat 3186.009 kb on + strandat 3186.010 kb on - strandat 3186.025 kb on + strandat 3186.132 kb on + strand, within IAI46_15155at 3186.139 kb on - strand, within IAI46_15155at 3186.244 kb on - strand, within IAI46_15155at 3186.244 kb on - strand, within IAI46_15155at 3186.265 kb on - strand, within IAI46_15155at 3186.300 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.309 kb on + strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.310 kb on - strand, within IAI46_15155at 3186.316 kb on + strand, within IAI46_15155at 3186.316 kb on + strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.317 kb on - strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.318 kb on + strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.319 kb on - strand, within IAI46_15155at 3186.323 kb on + strand, within IAI46_15155at 3186.340 kb on + strand, within IAI46_15155at 3186.621 kb on + strandat 3186.621 kb on + strandat 3186.621 kb on + strandat 3186.809 kb on + strand, within IAI46_15165at 3186.809 kb on + strand, within IAI46_15165at 3186.810 kb on - strand, within IAI46_15165at 3186.813 kb on + strand, within IAI46_15165at 3186.814 kb on - strand, within IAI46_15165at 3186.814 kb on - strand, within IAI46_15165at 3186.895 kb on + strandat 3186.923 kb on + strand, within IAI46_15170at 3186.924 kb on - strand, within IAI46_15170at 3186.924 kb on - strand, within IAI46_15170at 3186.940 kb on + strand, within IAI46_15170at 3186.947 kb on + strand, within IAI46_15170at 3186.980 kb on + strand, within IAI46_15170at 3186.981 kb on - strand, within IAI46_15170at 3186.994 kb on - strand, within IAI46_15170at 3186.994 kb on - strand, within IAI46_15170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
remove
3,184,824 + +0.5
3,184,824 + -1.0
3,184,825 - +0.3
3,184,940 - IAI46_15140 0.29 +0.5
3,184,948 + IAI46_15140 0.31 -0.0
3,184,950 + IAI46_15140 0.31 +0.1
3,184,951 - IAI46_15140 0.31 +0.7
3,184,951 - IAI46_15140 0.31 +0.9
3,184,951 - IAI46_15140 0.31 -0.1
3,185,055 + IAI46_15140 0.50 +0.1
3,185,056 - IAI46_15140 0.50 -1.4
3,185,100 + IAI46_15140 0.58 +0.7
3,185,102 + IAI46_15140 0.59 -0.2
3,185,103 - IAI46_15140 0.59 +0.6
3,185,123 + IAI46_15140 0.62 -0.4
3,185,124 - IAI46_15140 0.63 +0.7
3,185,258 + IAI46_15140 0.87 -0.0
3,185,258 + IAI46_15140 0.87 +0.5
3,185,259 - IAI46_15140 0.87 +0.4
3,185,266 + IAI46_15140 0.89 +0.5
3,185,282 - +0.8
3,185,290 + +0.2
3,185,330 - +0.6
3,185,434 + IAI46_15145 0.23 +0.3
3,185,597 - IAI46_15145 0.57 +1.5
3,185,678 + IAI46_15145 0.75 +0.3
3,185,679 - IAI46_15145 0.75 +0.6
3,185,689 - IAI46_15145 0.77 +0.2
3,185,689 - IAI46_15145 0.77 -0.9
3,185,782 - +1.1
3,185,810 - +0.9
3,185,970 - IAI46_15150 0.81 +1.1
3,185,980 + IAI46_15150 0.86 +0.7
3,186,009 + +1.0
3,186,009 + -0.0
3,186,010 - -0.1
3,186,025 + +1.0
3,186,132 + IAI46_15155 0.27 +0.5
3,186,139 - IAI46_15155 0.29 +0.6
3,186,244 - IAI46_15155 0.52 +0.3
3,186,244 - IAI46_15155 0.52 -0.5
3,186,265 - IAI46_15155 0.57 -1.0
3,186,300 + IAI46_15155 0.65 +1.0
3,186,309 + IAI46_15155 0.67 +1.5
3,186,309 + IAI46_15155 0.67 -0.1
3,186,309 + IAI46_15155 0.67 -0.5
3,186,309 + IAI46_15155 0.67 +0.8
3,186,309 + IAI46_15155 0.67 -0.5
3,186,310 - IAI46_15155 0.67 +1.3
3,186,310 - IAI46_15155 0.67 +0.3
3,186,310 - IAI46_15155 0.67 +1.0
3,186,310 - IAI46_15155 0.67 +0.3
3,186,316 + IAI46_15155 0.68 +0.5
3,186,316 + IAI46_15155 0.68 +0.9
3,186,317 - IAI46_15155 0.68 +1.4
3,186,317 - IAI46_15155 0.68 +1.1
3,186,317 - IAI46_15155 0.68 +1.4
3,186,317 - IAI46_15155 0.68 -0.0
3,186,318 + IAI46_15155 0.69 +0.2
3,186,318 + IAI46_15155 0.69 +0.1
3,186,318 + IAI46_15155 0.69 +1.2
3,186,318 + IAI46_15155 0.69 -1.2
3,186,319 - IAI46_15155 0.69 +0.9
3,186,319 - IAI46_15155 0.69 +0.3
3,186,319 - IAI46_15155 0.69 +0.5
3,186,319 - IAI46_15155 0.69 +0.8
3,186,323 + IAI46_15155 0.70 +0.1
3,186,340 + IAI46_15155 0.74 +0.6
3,186,621 + +0.6
3,186,621 + -0.0
3,186,621 + +0.2
3,186,809 + IAI46_15165 0.67 +0.9
3,186,809 + IAI46_15165 0.67 +0.4
3,186,810 - IAI46_15165 0.67 -0.6
3,186,813 + IAI46_15165 0.68 -0.0
3,186,814 - IAI46_15165 0.68 -0.1
3,186,814 - IAI46_15165 0.68 +0.1
3,186,895 + +1.1
3,186,923 + IAI46_15170 0.12 +1.3
3,186,924 - IAI46_15170 0.12 -0.0
3,186,924 - IAI46_15170 0.12 +0.2
3,186,940 + IAI46_15170 0.21 +0.4
3,186,947 + IAI46_15170 0.24 -1.5
3,186,980 + IAI46_15170 0.42 +0.7
3,186,981 - IAI46_15170 0.42 -0.0
3,186,994 - IAI46_15170 0.49 -0.1
3,186,994 - IAI46_15170 0.49 +1.4

Or see this region's nucleotide sequence