Strain Fitness in Serratia liquefaciens MT49 around IAI46_14940

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14930 and IAI46_14935 are separated by 228 nucleotidesIAI46_14935 and IAI46_14940 are separated by 130 nucleotidesIAI46_14940 and IAI46_14945 are separated by 197 nucleotidesIAI46_14945 and IAI46_14950 are separated by 9 nucleotides IAI46_14930: IAI46_14930 - peptidoglycan-binding protein LysM, at 3,154,677 to 3,155,123 _14930 IAI46_14935: IAI46_14935 - YebW family protein, at 3,155,352 to 3,155,543 _14935 IAI46_14940: IAI46_14940 - hypothetical protein, at 3,155,674 to 3,155,898 _14940 IAI46_14945: IAI46_14945 - hypothetical protein, at 3,156,096 to 3,156,875 _14945 IAI46_14950: IAI46_14950 - SGNH/GDSL hydrolase family protein, at 3,156,885 to 3,158,717 _14950 Position (kb) 3155 3156Strain fitness (log2 ratio) -2 -1 0 1 2at 3154.678 kb on + strandat 3154.761 kb on - strand, within IAI46_14930at 3154.761 kb on - strand, within IAI46_14930at 3154.763 kb on - strand, within IAI46_14930at 3154.781 kb on - strand, within IAI46_14930at 3154.781 kb on - strand, within IAI46_14930at 3154.863 kb on + strand, within IAI46_14930at 3155.123 kb on + strandat 3155.169 kb on - strandat 3155.172 kb on - strandat 3155.178 kb on - strandat 3155.213 kb on + strandat 3155.213 kb on + strandat 3155.214 kb on - strandat 3155.217 kb on - strandat 3155.217 kb on - strandat 3155.230 kb on - strandat 3155.269 kb on + strandat 3155.313 kb on - strandat 3155.341 kb on + strandat 3155.342 kb on - strandat 3155.343 kb on + strandat 3155.343 kb on + strandat 3155.343 kb on + strandat 3155.380 kb on - strand, within IAI46_14935at 3155.447 kb on + strand, within IAI46_14935at 3155.560 kb on + strandat 3155.562 kb on + strandat 3155.622 kb on + strandat 3155.623 kb on - strandat 3155.631 kb on - strandat 3155.631 kb on - strandat 3155.638 kb on + strandat 3155.790 kb on + strand, within IAI46_14940at 3155.793 kb on + strand, within IAI46_14940at 3155.850 kb on + strand, within IAI46_14940at 3155.850 kb on + strand, within IAI46_14940at 3155.851 kb on - strand, within IAI46_14940at 3156.051 kb on + strandat 3156.082 kb on - strandat 3156.098 kb on - strandat 3156.108 kb on - strandat 3156.127 kb on + strandat 3156.127 kb on + strandat 3156.128 kb on - strandat 3156.136 kb on - strandat 3156.184 kb on + strand, within IAI46_14945at 3156.185 kb on - strand, within IAI46_14945at 3156.189 kb on - strand, within IAI46_14945at 3156.199 kb on + strand, within IAI46_14945at 3156.199 kb on + strand, within IAI46_14945at 3156.204 kb on - strand, within IAI46_14945at 3156.255 kb on + strand, within IAI46_14945at 3156.256 kb on - strand, within IAI46_14945at 3156.260 kb on + strand, within IAI46_14945at 3156.261 kb on - strand, within IAI46_14945at 3156.291 kb on + strand, within IAI46_14945at 3156.580 kb on - strand, within IAI46_14945at 3156.584 kb on + strand, within IAI46_14945at 3156.584 kb on + strand, within IAI46_14945at 3156.623 kb on + strand, within IAI46_14945at 3156.624 kb on - strand, within IAI46_14945at 3156.627 kb on + strand, within IAI46_14945at 3156.628 kb on - strand, within IAI46_14945at 3156.628 kb on - strand, within IAI46_14945at 3156.652 kb on + strand, within IAI46_14945at 3156.756 kb on + strand, within IAI46_14945at 3156.798 kb on + strandat 3156.813 kb on - strandat 3156.815 kb on + strandat 3156.816 kb on - strandat 3156.846 kb on - strandat 3156.875 kb on + strandat 3156.877 kb on + strandat 3156.877 kb on + strandat 3156.878 kb on - strandat 3156.878 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,154,678 + +0.3
3,154,761 - IAI46_14930 0.19 -2.4
3,154,761 - IAI46_14930 0.19 +1.3
3,154,763 - IAI46_14930 0.19 -0.3
3,154,781 - IAI46_14930 0.23 +0.5
3,154,781 - IAI46_14930 0.23 +0.4
3,154,863 + IAI46_14930 0.42 +2.2
3,155,123 + -1.9
3,155,169 - -0.0
3,155,172 - +0.2
3,155,178 - +0.6
3,155,213 + +0.2
3,155,213 + -0.2
3,155,214 - +0.3
3,155,217 - +1.4
3,155,217 - +0.9
3,155,230 - +1.1
3,155,269 + +0.3
3,155,313 - +0.6
3,155,341 + -0.3
3,155,342 - -0.4
3,155,343 + +0.4
3,155,343 + +1.3
3,155,343 + +1.0
3,155,380 - IAI46_14935 0.15 -1.5
3,155,447 + IAI46_14935 0.49 -0.6
3,155,560 + +0.5
3,155,562 + +0.3
3,155,622 + +0.7
3,155,623 - +0.9
3,155,631 - +0.3
3,155,631 - -1.0
3,155,638 + -0.2
3,155,790 + IAI46_14940 0.52 +0.8
3,155,793 + IAI46_14940 0.53 +0.0
3,155,850 + IAI46_14940 0.78 +0.2
3,155,850 + IAI46_14940 0.78 +0.0
3,155,851 - IAI46_14940 0.79 +0.8
3,156,051 + -1.4
3,156,082 - +0.2
3,156,098 - -0.2
3,156,108 - +0.1
3,156,127 + -0.0
3,156,127 + +0.3
3,156,128 - +0.1
3,156,136 - +1.1
3,156,184 + IAI46_14945 0.11 -0.6
3,156,185 - IAI46_14945 0.11 +0.0
3,156,189 - IAI46_14945 0.12 +0.9
3,156,199 + IAI46_14945 0.13 +0.7
3,156,199 + IAI46_14945 0.13 +0.6
3,156,204 - IAI46_14945 0.14 -0.5
3,156,255 + IAI46_14945 0.20 +0.9
3,156,256 - IAI46_14945 0.21 +0.4
3,156,260 + IAI46_14945 0.21 -0.0
3,156,261 - IAI46_14945 0.21 -0.6
3,156,291 + IAI46_14945 0.25 +0.3
3,156,580 - IAI46_14945 0.62 +0.3
3,156,584 + IAI46_14945 0.63 +0.9
3,156,584 + IAI46_14945 0.63 +1.2
3,156,623 + IAI46_14945 0.68 +0.6
3,156,624 - IAI46_14945 0.68 +0.6
3,156,627 + IAI46_14945 0.68 +1.4
3,156,628 - IAI46_14945 0.68 +0.8
3,156,628 - IAI46_14945 0.68 -0.1
3,156,652 + IAI46_14945 0.71 +0.6
3,156,756 + IAI46_14945 0.85 +1.2
3,156,798 + +1.2
3,156,813 - -1.0
3,156,815 + +0.9
3,156,816 - +0.4
3,156,846 - +0.9
3,156,875 + +0.2
3,156,877 + +1.6
3,156,877 + +0.1
3,156,878 - +0.7
3,156,878 - +0.5

Or see this region's nucleotide sequence