Strain Fitness in Serratia liquefaciens MT49 around IAI46_14850

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14840 and IAI46_14845 are separated by 52 nucleotidesIAI46_14845 and IAI46_14850 are separated by 41 nucleotidesIAI46_14850 and IAI46_14855 are separated by 879 nucleotides IAI46_14840: IAI46_14840 - peptidoglycan editing factor PgeF, at 3,143,384 to 3,144,100 _14840 IAI46_14845: IAI46_14845 - transcription antiterminator/RNA stability regulator CspE, at 3,144,153 to 3,144,362 _14845 IAI46_14850: IAI46_14850 - DUF2627 domain-containing protein, at 3,144,404 to 3,144,520 _14850 IAI46_14855: IAI46_14855 - MBL fold metallo-hydrolase, at 3,145,400 to 3,146,398 _14855 Position (kb) 3144 3145Strain fitness (log2 ratio) -2 -1 0 1 2at 3143.532 kb on + strand, within IAI46_14840at 3143.533 kb on - strand, within IAI46_14840at 3143.574 kb on - strand, within IAI46_14840at 3143.789 kb on + strand, within IAI46_14840at 3143.850 kb on + strand, within IAI46_14840at 3143.996 kb on + strand, within IAI46_14840at 3143.997 kb on - strand, within IAI46_14840at 3144.072 kb on - strandat 3144.072 kb on - strandat 3144.083 kb on - strandat 3144.154 kb on + strandat 3144.271 kb on - strand, within IAI46_14845at 3144.339 kb on - strand, within IAI46_14845at 3144.370 kb on - strandat 3144.405 kb on + strandat 3144.406 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.443 kb on - strand, within IAI46_14850at 3144.443 kb on - strand, within IAI46_14850at 3144.487 kb on + strand, within IAI46_14850at 3144.521 kb on - strandat 3144.523 kb on - strandat 3144.523 kb on - strandat 3144.562 kb on + strandat 3144.563 kb on - strandat 3144.637 kb on + strandat 3144.638 kb on - strandat 3144.640 kb on - strandat 3144.645 kb on + strandat 3144.646 kb on - strandat 3144.646 kb on - strandat 3144.646 kb on - strandat 3144.770 kb on + strandat 3144.770 kb on + strandat 3144.770 kb on + strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.791 kb on - strandat 3144.858 kb on + strandat 3144.917 kb on - strandat 3144.957 kb on + strandat 3144.957 kb on + strandat 3144.957 kb on + strandat 3144.958 kb on - strandat 3145.035 kb on + strandat 3145.036 kb on - strandat 3145.057 kb on + strandat 3145.058 kb on - strandat 3145.058 kb on - strandat 3145.109 kb on + strandat 3145.165 kb on + strandat 3145.327 kb on + strandat 3145.327 kb on + strandat 3145.402 kb on - strandat 3145.409 kb on - strandat 3145.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,143,532 + IAI46_14840 0.21 -0.5
3,143,533 - IAI46_14840 0.21 -0.2
3,143,574 - IAI46_14840 0.26 +0.9
3,143,789 + IAI46_14840 0.56 +0.4
3,143,850 + IAI46_14840 0.65 -0.3
3,143,996 + IAI46_14840 0.85 -0.1
3,143,997 - IAI46_14840 0.85 -0.4
3,144,072 - -0.5
3,144,072 - +0.2
3,144,083 - +0.3
3,144,154 + -0.8
3,144,271 - IAI46_14845 0.56 -0.5
3,144,339 - IAI46_14845 0.89 -0.4
3,144,370 - -1.1
3,144,405 + -2.4
3,144,406 - -0.8
3,144,410 - -1.6
3,144,410 - -0.5
3,144,410 - -0.6
3,144,410 - -1.3
3,144,410 - -0.7
3,144,443 - IAI46_14850 0.33 -0.6
3,144,443 - IAI46_14850 0.33 -1.1
3,144,487 + IAI46_14850 0.71 -1.2
3,144,521 - -1.0
3,144,523 - +0.1
3,144,523 - -1.1
3,144,562 + -2.7
3,144,563 - -1.3
3,144,637 + +0.7
3,144,638 - +0.1
3,144,640 - -1.3
3,144,645 + -1.0
3,144,646 - +0.4
3,144,646 - +0.4
3,144,646 - -0.1
3,144,770 + +0.2
3,144,770 + +0.5
3,144,770 + -0.8
3,144,771 - -1.0
3,144,771 - +0.9
3,144,771 - -1.1
3,144,771 - +0.1
3,144,771 - +0.5
3,144,791 - +0.1
3,144,858 + -0.2
3,144,917 - -0.7
3,144,957 + +0.8
3,144,957 + -0.1
3,144,957 + -0.9
3,144,958 - -0.6
3,145,035 + +2.2
3,145,036 - -0.0
3,145,057 + +0.2
3,145,058 - +1.2
3,145,058 - +0.6
3,145,109 + +0.4
3,145,165 + +1.5
3,145,327 + -0.8
3,145,327 + -0.4
3,145,402 - +0.2
3,145,409 - -0.2
3,145,490 + +0.6

Or see this region's nucleotide sequence