Strain Fitness in Serratia liquefaciens MT49 around IAI46_14415

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14410 and IAI46_14415 are separated by 438 nucleotidesIAI46_14415 and IAI46_14420 are separated by 170 nucleotidesIAI46_14420 and IAI46_14425 are separated by 318 nucleotides IAI46_14410: IAI46_14410 - TonB-dependent siderophore receptor, at 3,055,450 to 3,057,567 _14410 IAI46_14415: IAI46_14415 - hypothetical protein, at 3,058,006 to 3,058,299 _14415 IAI46_14420: IAI46_14420 - hypothetical protein, at 3,058,470 to 3,058,952 _14420 IAI46_14425: IAI46_14425 - ABC transporter ATP-binding protein, at 3,059,271 to 3,060,080 _14425 Position (kb) 3058 3059Strain fitness (log2 ratio) -2 -1 0 1at 3057.089 kb on + strand, within IAI46_14410at 3057.090 kb on - strand, within IAI46_14410at 3057.159 kb on + strand, within IAI46_14410at 3057.160 kb on - strand, within IAI46_14410at 3057.161 kb on + strand, within IAI46_14410at 3057.208 kb on - strand, within IAI46_14410at 3057.297 kb on - strand, within IAI46_14410at 3057.325 kb on - strand, within IAI46_14410at 3057.325 kb on - strand, within IAI46_14410at 3057.390 kb on + strandat 3057.567 kb on + strandat 3057.740 kb on + strandat 3057.859 kb on - strandat 3057.989 kb on + strandat 3058.021 kb on - strandat 3058.060 kb on - strand, within IAI46_14415at 3058.099 kb on + strand, within IAI46_14415at 3058.100 kb on - strand, within IAI46_14415at 3058.103 kb on + strand, within IAI46_14415at 3058.104 kb on - strand, within IAI46_14415at 3058.108 kb on - strand, within IAI46_14415at 3058.533 kb on + strand, within IAI46_14420at 3058.534 kb on - strand, within IAI46_14420at 3058.534 kb on - strand, within IAI46_14420at 3058.536 kb on - strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.537 kb on + strand, within IAI46_14420at 3058.538 kb on - strand, within IAI46_14420at 3058.538 kb on - strand, within IAI46_14420at 3058.539 kb on + strand, within IAI46_14420at 3058.539 kb on + strand, within IAI46_14420at 3058.540 kb on - strand, within IAI46_14420at 3058.540 kb on - strand, within IAI46_14420at 3058.582 kb on + strand, within IAI46_14420at 3058.583 kb on - strand, within IAI46_14420at 3058.584 kb on + strand, within IAI46_14420at 3058.655 kb on + strand, within IAI46_14420at 3058.655 kb on + strand, within IAI46_14420at 3058.656 kb on - strand, within IAI46_14420at 3058.686 kb on + strand, within IAI46_14420at 3058.710 kb on + strand, within IAI46_14420at 3058.710 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.713 kb on + strand, within IAI46_14420at 3058.714 kb on - strand, within IAI46_14420at 3058.714 kb on - strand, within IAI46_14420at 3058.927 kb on + strandat 3058.941 kb on + strandat 3058.964 kb on + strandat 3058.964 kb on + strandat 3059.015 kb on + strandat 3059.015 kb on + strandat 3059.035 kb on + strandat 3059.036 kb on - strandat 3059.040 kb on + strandat 3059.096 kb on - strandat 3059.151 kb on + strandat 3059.151 kb on + strandat 3059.151 kb on + strandat 3059.156 kb on + strandat 3059.157 kb on - strandat 3059.157 kb on - strandat 3059.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,057,089 + IAI46_14410 0.77 -0.9
3,057,090 - IAI46_14410 0.77 +0.2
3,057,159 + IAI46_14410 0.81 +0.4
3,057,160 - IAI46_14410 0.81 +0.3
3,057,161 + IAI46_14410 0.81 -0.1
3,057,208 - IAI46_14410 0.83 +0.2
3,057,297 - IAI46_14410 0.87 -0.3
3,057,325 - IAI46_14410 0.89 +0.8
3,057,325 - IAI46_14410 0.89 +0.3
3,057,390 + -0.2
3,057,567 + +0.6
3,057,740 + -1.1
3,057,859 - -0.3
3,057,989 + +0.4
3,058,021 - +0.3
3,058,060 - IAI46_14415 0.18 -0.4
3,058,099 + IAI46_14415 0.32 -0.7
3,058,100 - IAI46_14415 0.32 -1.0
3,058,103 + IAI46_14415 0.33 -0.2
3,058,104 - IAI46_14415 0.33 +0.4
3,058,108 - IAI46_14415 0.35 -1.8
3,058,533 + IAI46_14420 0.13 +0.2
3,058,534 - IAI46_14420 0.13 +0.9
3,058,534 - IAI46_14420 0.13 -0.0
3,058,536 - IAI46_14420 0.14 +0.3
3,058,537 + IAI46_14420 0.14 +0.6
3,058,537 + IAI46_14420 0.14 -0.5
3,058,537 + IAI46_14420 0.14 -1.2
3,058,537 + IAI46_14420 0.14 +0.2
3,058,537 + IAI46_14420 0.14 -0.5
3,058,537 + IAI46_14420 0.14 -1.8
3,058,537 + IAI46_14420 0.14 -0.2
3,058,538 - IAI46_14420 0.14 -0.0
3,058,538 - IAI46_14420 0.14 +0.8
3,058,539 + IAI46_14420 0.14 -0.2
3,058,539 + IAI46_14420 0.14 +0.3
3,058,540 - IAI46_14420 0.14 +0.2
3,058,540 - IAI46_14420 0.14 -0.2
3,058,582 + IAI46_14420 0.23 +0.2
3,058,583 - IAI46_14420 0.23 -0.7
3,058,584 + IAI46_14420 0.24 -0.6
3,058,655 + IAI46_14420 0.38 +0.7
3,058,655 + IAI46_14420 0.38 -0.3
3,058,656 - IAI46_14420 0.39 +0.1
3,058,686 + IAI46_14420 0.45 -0.7
3,058,710 + IAI46_14420 0.50 -1.0
3,058,710 + IAI46_14420 0.50 +0.8
3,058,713 + IAI46_14420 0.50 +1.0
3,058,713 + IAI46_14420 0.50 +0.1
3,058,713 + IAI46_14420 0.50 +1.1
3,058,713 + IAI46_14420 0.50 +0.4
3,058,713 + IAI46_14420 0.50 +1.0
3,058,713 + IAI46_14420 0.50 -1.3
3,058,714 - IAI46_14420 0.51 -0.1
3,058,714 - IAI46_14420 0.51 +1.0
3,058,927 + -0.0
3,058,941 + -0.6
3,058,964 + -0.3
3,058,964 + -0.8
3,059,015 + +0.6
3,059,015 + -0.3
3,059,035 + -0.8
3,059,036 - +0.4
3,059,040 + +0.7
3,059,096 - -0.6
3,059,151 + +0.7
3,059,151 + +0.1
3,059,151 + +0.2
3,059,156 + -0.7
3,059,157 - +0.4
3,059,157 - +0.9
3,059,180 + +0.7

Or see this region's nucleotide sequence