Strain Fitness in Serratia liquefaciens MT49 around IAI46_14360

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14355 and IAI46_14360 are separated by 80 nucleotidesIAI46_14360 and IAI46_14365 are separated by 114 nucleotides IAI46_14355: IAI46_14355 - glyceraldehyde-3-phosphate dehydrogenase, at 3,045,167 to 3,046,162 _14355 IAI46_14360: IAI46_14360 - D-hexose-6-phosphate mutarotase, at 3,046,243 to 3,047,118 _14360 IAI46_14365: IAI46_14365 - MipA/OmpV family protein, at 3,047,233 to 3,047,937 _14365 Position (kb) 3046 3047 3048Strain fitness (log2 ratio) -3 -2 -1 0 1at 3046.291 kb on + strandat 3046.291 kb on + strandat 3046.292 kb on - strandat 3046.294 kb on - strandat 3046.350 kb on - strand, within IAI46_14360at 3046.725 kb on + strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.730 kb on - strand, within IAI46_14360at 3046.759 kb on - strand, within IAI46_14360at 3046.763 kb on + strand, within IAI46_14360at 3046.784 kb on - strand, within IAI46_14360at 3046.786 kb on - strand, within IAI46_14360at 3046.889 kb on + strand, within IAI46_14360at 3046.967 kb on + strand, within IAI46_14360at 3047.009 kb on - strand, within IAI46_14360at 3047.162 kb on - strandat 3047.194 kb on + strandat 3047.195 kb on - strandat 3047.204 kb on - strandat 3047.204 kb on - strandat 3047.261 kb on - strandat 3047.325 kb on - strand, within IAI46_14365at 3047.325 kb on - strand, within IAI46_14365at 3047.325 kb on - strand, within IAI46_14365at 3047.335 kb on - strand, within IAI46_14365at 3047.388 kb on - strand, within IAI46_14365at 3047.413 kb on - strand, within IAI46_14365at 3047.415 kb on - strand, within IAI46_14365at 3047.415 kb on - strand, within IAI46_14365at 3047.463 kb on - strand, within IAI46_14365at 3047.463 kb on - strand, within IAI46_14365at 3047.465 kb on + strand, within IAI46_14365at 3047.465 kb on + strand, within IAI46_14365at 3047.547 kb on - strand, within IAI46_14365at 3047.604 kb on + strand, within IAI46_14365at 3047.635 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3047.820 kb on - strand, within IAI46_14365at 3048.010 kb on + strandat 3048.011 kb on - strandat 3048.014 kb on - strandat 3048.014 kb on - strandat 3048.014 kb on - strandat 3048.022 kb on + strandat 3048.089 kb on + strandat 3048.090 kb on - strandat 3048.090 kb on - strandat 3048.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,046,291 + -3.2
3,046,291 + -0.3
3,046,292 - -0.1
3,046,294 - -0.9
3,046,350 - IAI46_14360 0.12 +0.4
3,046,725 + IAI46_14360 0.55 +0.2
3,046,726 - IAI46_14360 0.55 +0.4
3,046,726 - IAI46_14360 0.55 +0.6
3,046,726 - IAI46_14360 0.55 +0.2
3,046,726 - IAI46_14360 0.55 -0.2
3,046,726 - IAI46_14360 0.55 +0.0
3,046,730 - IAI46_14360 0.56 -0.8
3,046,759 - IAI46_14360 0.59 -0.4
3,046,763 + IAI46_14360 0.59 +0.0
3,046,784 - IAI46_14360 0.62 -0.8
3,046,786 - IAI46_14360 0.62 -0.0
3,046,889 + IAI46_14360 0.74 +1.0
3,046,967 + IAI46_14360 0.83 +0.7
3,047,009 - IAI46_14360 0.87 +0.6
3,047,162 - +0.4
3,047,194 + +0.4
3,047,195 - +0.8
3,047,204 - +0.7
3,047,204 - +0.9
3,047,261 - -1.0
3,047,325 - IAI46_14365 0.13 +0.6
3,047,325 - IAI46_14365 0.13 -0.7
3,047,325 - IAI46_14365 0.13 +0.7
3,047,335 - IAI46_14365 0.14 +0.5
3,047,388 - IAI46_14365 0.22 -1.2
3,047,413 - IAI46_14365 0.26 -0.6
3,047,415 - IAI46_14365 0.26 +0.8
3,047,415 - IAI46_14365 0.26 -0.6
3,047,463 - IAI46_14365 0.33 +0.3
3,047,463 - IAI46_14365 0.33 +1.2
3,047,465 + IAI46_14365 0.33 +0.4
3,047,465 + IAI46_14365 0.33 +0.7
3,047,547 - IAI46_14365 0.45 +0.2
3,047,604 + IAI46_14365 0.53 -0.0
3,047,635 - IAI46_14365 0.57 +0.9
3,047,820 - IAI46_14365 0.83 +0.5
3,047,820 - IAI46_14365 0.83 +0.5
3,047,820 - IAI46_14365 0.83 +0.7
3,048,010 + +1.1
3,048,011 - +0.7
3,048,014 - +0.5
3,048,014 - -0.1
3,048,014 - -0.8
3,048,022 + +0.4
3,048,089 + +0.2
3,048,090 - +0.8
3,048,090 - +0.2
3,048,108 - +0.8

Or see this region's nucleotide sequence