Strain Fitness in Serratia liquefaciens MT49 around IAI46_14225

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14220 and IAI46_14225 are separated by 133 nucleotidesIAI46_14225 and IAI46_14230 are separated by 701 nucleotides IAI46_14220: IAI46_14220 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 3,019,130 to 3,021,802 _14220 IAI46_14225: IAI46_14225 - thymidine kinase, at 3,021,936 to 3,022,520 _14225 IAI46_14230: IAI46_14230 - DNA-binding transcriptional regulator H-NS, at 3,023,222 to 3,023,629 _14230 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -1 0 1at 3020.987 kb on + strand, within IAI46_14220at 3021.197 kb on + strand, within IAI46_14220at 3021.198 kb on - strand, within IAI46_14220at 3021.198 kb on - strand, within IAI46_14220at 3021.380 kb on + strand, within IAI46_14220at 3021.383 kb on - strand, within IAI46_14220at 3021.709 kb on + strandat 3021.709 kb on + strandat 3021.717 kb on - strandat 3021.783 kb on + strandat 3021.952 kb on - strandat 3021.988 kb on + strandat 3021.989 kb on - strandat 3022.064 kb on + strand, within IAI46_14225at 3022.133 kb on - strand, within IAI46_14225at 3022.334 kb on + strand, within IAI46_14225at 3022.425 kb on - strand, within IAI46_14225at 3022.541 kb on - strandat 3022.579 kb on - strandat 3022.579 kb on - strandat 3022.614 kb on - strandat 3022.675 kb on + strandat 3022.685 kb on - strandat 3022.685 kb on - strandat 3022.734 kb on + strandat 3022.755 kb on - strandat 3022.762 kb on - strandat 3022.816 kb on + strandat 3022.817 kb on - strandat 3022.850 kb on - strandat 3022.893 kb on - strandat 3022.899 kb on - strandat 3022.900 kb on + strandat 3022.963 kb on + strandat 3022.965 kb on + strandat 3022.987 kb on - strandat 3023.071 kb on - strandat 3023.083 kb on + strandat 3023.085 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,020,987 + IAI46_14220 0.69 -0.6
3,021,197 + IAI46_14220 0.77 +0.3
3,021,198 - IAI46_14220 0.77 +0.6
3,021,198 - IAI46_14220 0.77 -0.1
3,021,380 + IAI46_14220 0.84 -0.4
3,021,383 - IAI46_14220 0.84 -0.5
3,021,709 + +0.3
3,021,709 + +0.1
3,021,717 - +0.0
3,021,783 + -0.1
3,021,952 - +0.2
3,021,988 + -1.1
3,021,989 - +0.3
3,022,064 + IAI46_14225 0.22 +0.3
3,022,133 - IAI46_14225 0.34 +1.6
3,022,334 + IAI46_14225 0.68 +0.1
3,022,425 - IAI46_14225 0.84 +0.3
3,022,541 - -0.5
3,022,579 - +0.8
3,022,579 - -0.4
3,022,614 - +0.9
3,022,675 + +0.9
3,022,685 - -0.5
3,022,685 - +0.3
3,022,734 + -0.8
3,022,755 - -1.2
3,022,762 - -0.0
3,022,816 + -1.7
3,022,817 - -0.5
3,022,850 - +0.4
3,022,893 - +0.4
3,022,899 - -0.8
3,022,900 + -0.7
3,022,963 + -0.3
3,022,965 + -0.2
3,022,987 - -0.2
3,023,071 - +0.4
3,023,083 + -1.5
3,023,085 + -0.5

Or see this region's nucleotide sequence