Strain Fitness in Serratia liquefaciens MT49 around IAI46_13450

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13445 and IAI46_13450 are separated by 158 nucleotidesIAI46_13450 and IAI46_13455 are separated by 207 nucleotidesIAI46_13455 and IAI46_13460 are separated by 5 nucleotides IAI46_13445: IAI46_13445 - oligopeptide ABC transporter substrate-binding protein OppA, at 2,872,376 to 2,874,010 _13445 IAI46_13450: IAI46_13450 - hypothetical protein, at 2,874,169 to 2,874,519 _13450 IAI46_13455: IAI46_13455 - murein tripeptide amidase MpaA, at 2,874,727 to 2,875,434 _13455 IAI46_13460: IAI46_13460 - L-Ala-D/L-Glu epimerase, at 2,875,440 to 2,876,411 _13460 Position (kb) 2874 2875Strain fitness (log2 ratio) -1 0 1at 2873.221 kb on - strand, within IAI46_13445at 2873.256 kb on - strand, within IAI46_13445at 2873.256 kb on - strand, within IAI46_13445at 2873.299 kb on - strand, within IAI46_13445at 2873.354 kb on - strand, within IAI46_13445at 2873.354 kb on - strand, within IAI46_13445at 2873.355 kb on + strand, within IAI46_13445at 2873.355 kb on + strand, within IAI46_13445at 2873.356 kb on - strand, within IAI46_13445at 2873.466 kb on + strand, within IAI46_13445at 2873.467 kb on - strand, within IAI46_13445at 2873.479 kb on + strand, within IAI46_13445at 2873.502 kb on + strand, within IAI46_13445at 2873.503 kb on - strand, within IAI46_13445at 2873.644 kb on - strand, within IAI46_13445at 2874.049 kb on + strandat 2874.050 kb on - strandat 2874.052 kb on - strandat 2874.073 kb on - strandat 2874.095 kb on + strandat 2874.171 kb on - strandat 2874.234 kb on + strand, within IAI46_13450at 2874.311 kb on + strand, within IAI46_13450at 2874.312 kb on - strand, within IAI46_13450at 2874.317 kb on + strand, within IAI46_13450at 2874.317 kb on + strand, within IAI46_13450at 2874.318 kb on - strand, within IAI46_13450at 2874.318 kb on - strand, within IAI46_13450at 2874.318 kb on - strand, within IAI46_13450at 2874.327 kb on - strand, within IAI46_13450at 2874.491 kb on + strandat 2874.491 kb on + strandat 2874.491 kb on + strandat 2874.492 kb on - strandat 2874.492 kb on - strandat 2874.492 kb on - strandat 2874.495 kb on + strandat 2874.502 kb on - strandat 2874.523 kb on - strandat 2874.523 kb on - strandat 2874.559 kb on + strandat 2874.560 kb on - strandat 2874.563 kb on - strandat 2874.564 kb on + strandat 2874.565 kb on - strandat 2874.565 kb on - strandat 2874.593 kb on + strandat 2874.594 kb on - strandat 2874.625 kb on - strandat 2874.645 kb on + strandat 2874.645 kb on + strandat 2874.646 kb on - strandat 2874.646 kb on - strandat 2874.675 kb on + strandat 2875.393 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,873,221 - IAI46_13445 0.52 +1.0
2,873,256 - IAI46_13445 0.54 +0.1
2,873,256 - IAI46_13445 0.54 +1.7
2,873,299 - IAI46_13445 0.56 -0.9
2,873,354 - IAI46_13445 0.60 -0.2
2,873,354 - IAI46_13445 0.60 -0.0
2,873,355 + IAI46_13445 0.60 -1.2
2,873,355 + IAI46_13445 0.60 -0.0
2,873,356 - IAI46_13445 0.60 +1.0
2,873,466 + IAI46_13445 0.67 +1.1
2,873,467 - IAI46_13445 0.67 +0.9
2,873,479 + IAI46_13445 0.67 -0.2
2,873,502 + IAI46_13445 0.69 +0.3
2,873,503 - IAI46_13445 0.69 +0.0
2,873,644 - IAI46_13445 0.78 +0.6
2,874,049 + -0.0
2,874,050 - -0.2
2,874,052 - -1.0
2,874,073 - +0.9
2,874,095 + +0.2
2,874,171 - +0.4
2,874,234 + IAI46_13450 0.19 +0.7
2,874,311 + IAI46_13450 0.40 +0.1
2,874,312 - IAI46_13450 0.41 +0.5
2,874,317 + IAI46_13450 0.42 +1.1
2,874,317 + IAI46_13450 0.42 +0.3
2,874,318 - IAI46_13450 0.42 +0.7
2,874,318 - IAI46_13450 0.42 +0.1
2,874,318 - IAI46_13450 0.42 -0.3
2,874,327 - IAI46_13450 0.45 +0.3
2,874,491 + -0.9
2,874,491 + +0.6
2,874,491 + +0.1
2,874,492 - +0.2
2,874,492 - +1.1
2,874,492 - +1.1
2,874,495 + -0.1
2,874,502 - -0.9
2,874,523 - -0.4
2,874,523 - -0.7
2,874,559 + +0.0
2,874,560 - -1.6
2,874,563 - +0.7
2,874,564 + +0.4
2,874,565 - +0.4
2,874,565 - -0.1
2,874,593 + -0.4
2,874,594 - -0.3
2,874,625 - +1.1
2,874,645 + +0.3
2,874,645 + +0.2
2,874,646 - -0.1
2,874,646 - -0.1
2,874,675 + -0.1
2,875,393 + -0.1

Or see this region's nucleotide sequence