Strain Fitness in Serratia liquefaciens MT49 around IAI46_13185

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13175 and IAI46_13180 are separated by 73 nucleotidesIAI46_13180 and IAI46_13185 are separated by 99 nucleotidesIAI46_13185 and IAI46_13190 are separated by 168 nucleotides IAI46_13175: IAI46_13175 - flagellar brake protein, at 2,809,536 to 2,810,249 _13175 IAI46_13180: IAI46_13180 - N-formylglutamate amidohydrolase, at 2,810,323 to 2,811,105 _13180 IAI46_13185: IAI46_13185 - ornithine lipid synthase OlsF, at 2,811,205 to 2,812,926 _13185 IAI46_13190: IAI46_13190 - DUF4091 domain-containing protein, at 2,813,095 to 2,814,756 _13190 Position (kb) 2811 2812 2813Strain fitness (log2 ratio) -2 -1 0 1at 2810.223 kb on - strandat 2810.435 kb on + strand, within IAI46_13180at 2810.474 kb on + strand, within IAI46_13180at 2810.475 kb on - strand, within IAI46_13180at 2810.475 kb on - strand, within IAI46_13180at 2810.711 kb on + strand, within IAI46_13180at 2810.855 kb on + strand, within IAI46_13180at 2810.892 kb on + strand, within IAI46_13180at 2810.892 kb on + strand, within IAI46_13180at 2810.934 kb on + strand, within IAI46_13180at 2810.944 kb on + strand, within IAI46_13180at 2811.017 kb on - strand, within IAI46_13180at 2811.134 kb on + strandat 2811.135 kb on - strandat 2811.135 kb on - strandat 2811.139 kb on + strandat 2811.139 kb on + strandat 2811.139 kb on + strandat 2811.139 kb on + strandat 2811.144 kb on + strandat 2811.212 kb on - strandat 2811.212 kb on - strandat 2811.212 kb on - strandat 2811.268 kb on - strandat 2811.303 kb on + strandat 2811.303 kb on + strandat 2811.304 kb on - strandat 2811.309 kb on + strandat 2811.372 kb on + strandat 2811.373 kb on - strandat 2811.374 kb on + strandat 2811.374 kb on + strandat 2811.375 kb on - strandat 2811.381 kb on + strand, within IAI46_13185at 2811.383 kb on + strand, within IAI46_13185at 2811.384 kb on - strand, within IAI46_13185at 2811.618 kb on - strand, within IAI46_13185at 2811.623 kb on + strand, within IAI46_13185at 2811.742 kb on - strand, within IAI46_13185at 2811.782 kb on + strand, within IAI46_13185at 2811.900 kb on - strand, within IAI46_13185at 2812.291 kb on + strand, within IAI46_13185at 2812.292 kb on - strand, within IAI46_13185at 2812.292 kb on - strand, within IAI46_13185at 2812.345 kb on - strand, within IAI46_13185at 2812.537 kb on - strand, within IAI46_13185at 2812.538 kb on + strand, within IAI46_13185at 2812.587 kb on - strand, within IAI46_13185at 2812.760 kb on + strandat 2812.761 kb on - strandat 2812.959 kb on + strandat 2812.970 kb on + strandat 2812.970 kb on + strandat 2812.978 kb on + strandat 2812.989 kb on + strandat 2812.990 kb on - strandat 2813.030 kb on - strandat 2813.037 kb on + strandat 2813.284 kb on + strand, within IAI46_13190at 2813.284 kb on + strand, within IAI46_13190at 2813.285 kb on - strand, within IAI46_13190at 2813.421 kb on - strand, within IAI46_13190at 2813.460 kb on - strand, within IAI46_13190at 2813.549 kb on + strand, within IAI46_13190at 2813.553 kb on - strand, within IAI46_13190at 2813.595 kb on + strand, within IAI46_13190at 2813.755 kb on - strand, within IAI46_13190

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,810,223 - +0.1
2,810,435 + IAI46_13180 0.14 +0.5
2,810,474 + IAI46_13180 0.19 +1.4
2,810,475 - IAI46_13180 0.19 +0.4
2,810,475 - IAI46_13180 0.19 +0.0
2,810,711 + IAI46_13180 0.50 -0.5
2,810,855 + IAI46_13180 0.68 +0.1
2,810,892 + IAI46_13180 0.73 +0.1
2,810,892 + IAI46_13180 0.73 -0.1
2,810,934 + IAI46_13180 0.78 -0.5
2,810,944 + IAI46_13180 0.79 +0.4
2,811,017 - IAI46_13180 0.89 +0.1
2,811,134 + +0.7
2,811,135 - +0.2
2,811,135 - +0.4
2,811,139 + +0.5
2,811,139 + +1.1
2,811,139 + +0.5
2,811,139 + +0.9
2,811,144 + -0.9
2,811,212 - -0.8
2,811,212 - -0.2
2,811,212 - +0.1
2,811,268 - +0.2
2,811,303 + -0.4
2,811,303 + +0.3
2,811,304 - -0.3
2,811,309 + -0.3
2,811,372 + -0.7
2,811,373 - -1.2
2,811,374 + +0.2
2,811,374 + -0.9
2,811,375 - -0.0
2,811,381 + IAI46_13185 0.10 -0.1
2,811,383 + IAI46_13185 0.10 -0.5
2,811,384 - IAI46_13185 0.10 -0.7
2,811,618 - IAI46_13185 0.24 +0.1
2,811,623 + IAI46_13185 0.24 +0.1
2,811,742 - IAI46_13185 0.31 +0.8
2,811,782 + IAI46_13185 0.34 +1.3
2,811,900 - IAI46_13185 0.40 -0.3
2,812,291 + IAI46_13185 0.63 +0.5
2,812,292 - IAI46_13185 0.63 -0.6
2,812,292 - IAI46_13185 0.63 +0.2
2,812,345 - IAI46_13185 0.66 -0.0
2,812,537 - IAI46_13185 0.77 -1.1
2,812,538 + IAI46_13185 0.77 +0.6
2,812,587 - IAI46_13185 0.80 -0.9
2,812,760 + +0.7
2,812,761 - -1.7
2,812,959 + +0.1
2,812,970 + +0.7
2,812,970 + +0.5
2,812,978 + -0.7
2,812,989 + +0.5
2,812,990 - +1.7
2,813,030 - -0.5
2,813,037 + -0.9
2,813,284 + IAI46_13190 0.11 +0.5
2,813,284 + IAI46_13190 0.11 -1.7
2,813,285 - IAI46_13190 0.11 +0.2
2,813,421 - IAI46_13190 0.20 -0.6
2,813,460 - IAI46_13190 0.22 +0.3
2,813,549 + IAI46_13190 0.27 -1.3
2,813,553 - IAI46_13190 0.28 -0.8
2,813,595 + IAI46_13190 0.30 -2.1
2,813,755 - IAI46_13190 0.40 +0.7

Or see this region's nucleotide sequence