Strain Fitness in Serratia liquefaciens MT49 around IAI46_13175

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13165 and IAI46_13170 are separated by 3 nucleotidesIAI46_13170 and IAI46_13175 are separated by 41 nucleotidesIAI46_13175 and IAI46_13180 are separated by 73 nucleotidesIAI46_13180 and IAI46_13185 are separated by 99 nucleotides IAI46_13165: IAI46_13165 - glutamine amidotransferase, at 2,807,938 to 2,808,651 _13165 IAI46_13170: IAI46_13170 - pyridoxal kinase, at 2,808,655 to 2,809,494 _13170 IAI46_13175: IAI46_13175 - flagellar brake protein, at 2,809,536 to 2,810,249 _13175 IAI46_13180: IAI46_13180 - N-formylglutamate amidohydrolase, at 2,810,323 to 2,811,105 _13180 IAI46_13185: IAI46_13185 - ornithine lipid synthase OlsF, at 2,811,205 to 2,812,926 _13185 Position (kb) 2809 2810 2811Strain fitness (log2 ratio) -2 -1 0 1at 2808.612 kb on - strandat 2808.652 kb on + strandat 2808.721 kb on + strandat 2808.722 kb on - strandat 2808.722 kb on - strandat 2808.817 kb on + strand, within IAI46_13170at 2808.818 kb on - strand, within IAI46_13170at 2808.820 kb on + strand, within IAI46_13170at 2808.821 kb on - strand, within IAI46_13170at 2808.972 kb on - strand, within IAI46_13170at 2809.010 kb on - strand, within IAI46_13170at 2809.011 kb on + strand, within IAI46_13170at 2809.048 kb on + strand, within IAI46_13170at 2809.048 kb on + strand, within IAI46_13170at 2809.049 kb on - strand, within IAI46_13170at 2809.302 kb on + strand, within IAI46_13170at 2809.846 kb on + strand, within IAI46_13175at 2809.865 kb on - strand, within IAI46_13175at 2810.050 kb on + strand, within IAI46_13175at 2810.050 kb on + strand, within IAI46_13175at 2810.223 kb on - strandat 2810.435 kb on + strand, within IAI46_13180at 2810.474 kb on + strand, within IAI46_13180at 2810.475 kb on - strand, within IAI46_13180at 2810.475 kb on - strand, within IAI46_13180at 2810.711 kb on + strand, within IAI46_13180at 2810.855 kb on + strand, within IAI46_13180at 2810.892 kb on + strand, within IAI46_13180at 2810.892 kb on + strand, within IAI46_13180at 2810.934 kb on + strand, within IAI46_13180at 2810.944 kb on + strand, within IAI46_13180at 2811.017 kb on - strand, within IAI46_13180at 2811.134 kb on + strandat 2811.135 kb on - strandat 2811.135 kb on - strandat 2811.139 kb on + strandat 2811.139 kb on + strandat 2811.139 kb on + strandat 2811.139 kb on + strandat 2811.144 kb on + strandat 2811.212 kb on - strandat 2811.212 kb on - strandat 2811.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,808,612 - -1.6
2,808,652 + -0.2
2,808,721 + +0.8
2,808,722 - -0.9
2,808,722 - -0.9
2,808,817 + IAI46_13170 0.19 +0.5
2,808,818 - IAI46_13170 0.19 +0.0
2,808,820 + IAI46_13170 0.20 +1.1
2,808,821 - IAI46_13170 0.20 +0.6
2,808,972 - IAI46_13170 0.38 -0.1
2,809,010 - IAI46_13170 0.42 +0.1
2,809,011 + IAI46_13170 0.42 -0.5
2,809,048 + IAI46_13170 0.47 +0.1
2,809,048 + IAI46_13170 0.47 +0.3
2,809,049 - IAI46_13170 0.47 +0.3
2,809,302 + IAI46_13170 0.77 -0.2
2,809,846 + IAI46_13175 0.43 -2.2
2,809,865 - IAI46_13175 0.46 -0.2
2,810,050 + IAI46_13175 0.72 -1.0
2,810,050 + IAI46_13175 0.72 +0.5
2,810,223 - +0.1
2,810,435 + IAI46_13180 0.14 +0.5
2,810,474 + IAI46_13180 0.19 +1.4
2,810,475 - IAI46_13180 0.19 +0.4
2,810,475 - IAI46_13180 0.19 +0.0
2,810,711 + IAI46_13180 0.50 -0.5
2,810,855 + IAI46_13180 0.68 +0.1
2,810,892 + IAI46_13180 0.73 +0.1
2,810,892 + IAI46_13180 0.73 -0.1
2,810,934 + IAI46_13180 0.78 -0.5
2,810,944 + IAI46_13180 0.79 +0.4
2,811,017 - IAI46_13180 0.89 +0.1
2,811,134 + +0.7
2,811,135 - +0.2
2,811,135 - +0.4
2,811,139 + +0.5
2,811,139 + +1.1
2,811,139 + +0.5
2,811,139 + +0.9
2,811,144 + -0.9
2,811,212 - -0.8
2,811,212 - -0.2
2,811,212 - +0.1

Or see this region's nucleotide sequence