Strain Fitness in Serratia liquefaciens MT49 around IAI46_12850

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12840 and IAI46_12845 are separated by 1 nucleotidesIAI46_12845 and IAI46_12850 are separated by 9 nucleotidesIAI46_12850 and IAI46_12855 are separated by 355 nucleotides IAI46_12840: IAI46_12840 - hydroxyacid dehydrogenase, at 2,735,568 to 2,736,548 _12840 IAI46_12845: IAI46_12845 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 2,736,550 to 2,737,365 _12845 IAI46_12850: IAI46_12850 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,737,375 to 2,738,808 _12850 IAI46_12855: IAI46_12855 - MurR/RpiR family transcriptional regulator, at 2,739,164 to 2,740,105 _12855 Position (kb) 2737 2738 2739Strain fitness (log2 ratio) -1 0 1 2at 2736.430 kb on + strand, within IAI46_12840at 2736.431 kb on - strand, within IAI46_12840at 2736.496 kb on - strandat 2736.538 kb on - strandat 2736.650 kb on - strand, within IAI46_12845at 2736.772 kb on + strand, within IAI46_12845at 2736.972 kb on - strand, within IAI46_12845at 2737.169 kb on - strand, within IAI46_12845at 2737.197 kb on + strand, within IAI46_12845at 2737.198 kb on - strand, within IAI46_12845at 2737.240 kb on + strand, within IAI46_12845at 2737.376 kb on + strandat 2737.410 kb on - strandat 2737.420 kb on - strandat 2737.497 kb on - strandat 2737.497 kb on - strandat 2737.574 kb on + strand, within IAI46_12850at 2737.728 kb on - strand, within IAI46_12850at 2738.042 kb on - strand, within IAI46_12850at 2738.177 kb on + strand, within IAI46_12850at 2738.178 kb on - strand, within IAI46_12850at 2738.272 kb on + strand, within IAI46_12850at 2738.272 kb on + strand, within IAI46_12850at 2738.273 kb on - strand, within IAI46_12850at 2738.301 kb on + strand, within IAI46_12850at 2738.479 kb on - strand, within IAI46_12850at 2738.479 kb on - strand, within IAI46_12850at 2738.680 kb on - strandat 2738.784 kb on + strandat 2738.785 kb on - strandat 2738.805 kb on - strandat 2739.294 kb on - strand, within IAI46_12855at 2739.314 kb on - strand, within IAI46_12855at 2739.403 kb on + strand, within IAI46_12855at 2739.404 kb on - strand, within IAI46_12855at 2739.465 kb on - strand, within IAI46_12855at 2739.577 kb on - strand, within IAI46_12855at 2739.644 kb on + strand, within IAI46_12855at 2739.646 kb on + strand, within IAI46_12855at 2739.646 kb on + strand, within IAI46_12855at 2739.769 kb on + strand, within IAI46_12855at 2739.770 kb on - strand, within IAI46_12855at 2739.790 kb on + strand, within IAI46_12855at 2739.791 kb on - strand, within IAI46_12855

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,736,430 + IAI46_12840 0.88 +0.9
2,736,431 - IAI46_12840 0.88 +0.5
2,736,496 - +0.3
2,736,538 - +1.0
2,736,650 - IAI46_12845 0.12 +0.4
2,736,772 + IAI46_12845 0.27 +0.7
2,736,972 - IAI46_12845 0.52 +1.8
2,737,169 - IAI46_12845 0.76 +1.2
2,737,197 + IAI46_12845 0.79 -0.5
2,737,198 - IAI46_12845 0.79 +1.4
2,737,240 + IAI46_12845 0.85 -0.1
2,737,376 + -0.6
2,737,410 - +0.6
2,737,420 - -0.6
2,737,497 - -0.3
2,737,497 - +0.1
2,737,574 + IAI46_12850 0.14 -0.1
2,737,728 - IAI46_12850 0.25 -0.2
2,738,042 - IAI46_12850 0.47 +0.4
2,738,177 + IAI46_12850 0.56 -0.9
2,738,178 - IAI46_12850 0.56 -0.0
2,738,272 + IAI46_12850 0.63 -0.4
2,738,272 + IAI46_12850 0.63 +0.8
2,738,273 - IAI46_12850 0.63 +0.2
2,738,301 + IAI46_12850 0.65 +0.1
2,738,479 - IAI46_12850 0.77 +0.6
2,738,479 - IAI46_12850 0.77 +0.9
2,738,680 - +0.4
2,738,784 + +0.1
2,738,785 - -0.2
2,738,805 - -0.7
2,739,294 - IAI46_12855 0.14 -1.2
2,739,314 - IAI46_12855 0.16 -0.5
2,739,403 + IAI46_12855 0.25 +0.0
2,739,404 - IAI46_12855 0.25 +1.1
2,739,465 - IAI46_12855 0.32 +0.5
2,739,577 - IAI46_12855 0.44 -0.7
2,739,644 + IAI46_12855 0.51 +0.7
2,739,646 + IAI46_12855 0.51 -0.6
2,739,646 + IAI46_12855 0.51 -0.2
2,739,769 + IAI46_12855 0.64 +0.6
2,739,770 - IAI46_12855 0.64 +0.2
2,739,790 + IAI46_12855 0.66 -0.1
2,739,791 - IAI46_12855 0.67 +1.7

Or see this region's nucleotide sequence