Strain Fitness in Serratia liquefaciens MT49 around IAI46_12715

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12710 and IAI46_12715 are separated by 2 nucleotidesIAI46_12715 and IAI46_12720 are separated by 151 nucleotides IAI46_12710: IAI46_12710 - efflux RND transporter permease subunit, at 2,702,396 to 2,705,533 _12710 IAI46_12715: IAI46_12715 - efflux RND transporter periplasmic adaptor subunit, at 2,705,536 to 2,706,678 _12715 IAI46_12720: IAI46_12720 - MFS transporter, at 2,706,830 to 2,708,344 _12720 Position (kb) 2705 2706 2707Strain fitness (log2 ratio) -2 -1 0 1at 2704.560 kb on + strand, within IAI46_12710at 2704.711 kb on - strand, within IAI46_12710at 2704.869 kb on - strand, within IAI46_12710at 2704.913 kb on + strand, within IAI46_12710at 2705.106 kb on + strand, within IAI46_12710at 2705.263 kb on + strandat 2705.263 kb on + strandat 2705.263 kb on + strandat 2705.264 kb on - strandat 2705.326 kb on + strandat 2705.608 kb on - strandat 2705.608 kb on - strandat 2705.608 kb on - strandat 2705.813 kb on - strand, within IAI46_12715at 2705.828 kb on + strand, within IAI46_12715at 2705.829 kb on - strand, within IAI46_12715at 2705.859 kb on + strand, within IAI46_12715at 2705.940 kb on + strand, within IAI46_12715at 2705.940 kb on + strand, within IAI46_12715at 2705.941 kb on - strand, within IAI46_12715at 2705.941 kb on - strand, within IAI46_12715at 2705.941 kb on - strand, within IAI46_12715at 2706.245 kb on + strand, within IAI46_12715at 2706.296 kb on - strand, within IAI46_12715at 2706.309 kb on - strand, within IAI46_12715at 2706.380 kb on + strand, within IAI46_12715at 2706.692 kb on + strandat 2707.115 kb on - strand, within IAI46_12720at 2707.115 kb on - strand, within IAI46_12720at 2707.193 kb on - strand, within IAI46_12720at 2707.227 kb on + strand, within IAI46_12720at 2707.228 kb on - strand, within IAI46_12720at 2707.302 kb on - strand, within IAI46_12720at 2707.304 kb on - strand, within IAI46_12720at 2707.304 kb on - strand, within IAI46_12720at 2707.478 kb on - strand, within IAI46_12720at 2707.487 kb on - strand, within IAI46_12720at 2707.547 kb on - strand, within IAI46_12720

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,704,560 + IAI46_12710 0.69 +0.8
2,704,711 - IAI46_12710 0.74 -0.3
2,704,869 - IAI46_12710 0.79 +0.3
2,704,913 + IAI46_12710 0.80 -2.2
2,705,106 + IAI46_12710 0.86 +0.6
2,705,263 + -1.5
2,705,263 + +0.4
2,705,263 + -0.1
2,705,264 - +0.1
2,705,326 + +0.2
2,705,608 - -1.5
2,705,608 - +0.0
2,705,608 - +0.5
2,705,813 - IAI46_12715 0.24 +0.1
2,705,828 + IAI46_12715 0.26 +0.5
2,705,829 - IAI46_12715 0.26 -1.4
2,705,859 + IAI46_12715 0.28 +0.7
2,705,940 + IAI46_12715 0.35 +0.1
2,705,940 + IAI46_12715 0.35 +1.0
2,705,941 - IAI46_12715 0.35 +0.7
2,705,941 - IAI46_12715 0.35 +0.2
2,705,941 - IAI46_12715 0.35 +0.3
2,706,245 + IAI46_12715 0.62 +1.1
2,706,296 - IAI46_12715 0.66 +0.1
2,706,309 - IAI46_12715 0.68 -1.0
2,706,380 + IAI46_12715 0.74 -0.8
2,706,692 + +0.3
2,707,115 - IAI46_12720 0.19 +0.4
2,707,115 - IAI46_12720 0.19 +1.1
2,707,193 - IAI46_12720 0.24 +0.6
2,707,227 + IAI46_12720 0.26 +0.8
2,707,228 - IAI46_12720 0.26 +1.1
2,707,302 - IAI46_12720 0.31 +0.7
2,707,304 - IAI46_12720 0.31 +0.5
2,707,304 - IAI46_12720 0.31 +0.1
2,707,478 - IAI46_12720 0.43 +0.8
2,707,487 - IAI46_12720 0.43 +0.6
2,707,547 - IAI46_12720 0.47 +0.5

Or see this region's nucleotide sequence