Strain Fitness in Serratia liquefaciens MT49 around IAI46_12645

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12640 and IAI46_12645 are separated by 343 nucleotidesIAI46_12645 and IAI46_12650 are separated by 242 nucleotides IAI46_12640: IAI46_12640 - carboxylesterase family protein, at 2,685,810 to 2,687,411 _12640 IAI46_12645: IAI46_12645 - DUF2946 domain-containing protein, at 2,687,755 to 2,688,207 _12645 IAI46_12650: IAI46_12650 - TonB-dependent copper receptor, at 2,688,450 to 2,690,510 _12650 Position (kb) 2687 2688 2689Strain fitness (log2 ratio) -2 -1 0 1at 2686.803 kb on - strand, within IAI46_12640at 2687.037 kb on - strand, within IAI46_12640at 2687.071 kb on - strand, within IAI46_12640at 2687.149 kb on + strand, within IAI46_12640at 2687.242 kb on - strand, within IAI46_12640at 2687.332 kb on - strandat 2687.336 kb on - strandat 2687.441 kb on + strandat 2687.564 kb on - strandat 2687.610 kb on + strandat 2687.634 kb on + strandat 2687.668 kb on - strandat 2687.707 kb on - strandat 2687.745 kb on + strandat 2687.751 kb on - strandat 2687.751 kb on - strandat 2687.751 kb on - strandat 2687.752 kb on + strandat 2687.752 kb on + strandat 2687.752 kb on + strandat 2687.752 kb on + strandat 2687.752 kb on + strandat 2687.752 kb on + strandat 2687.753 kb on - strandat 2687.753 kb on - strandat 2687.753 kb on - strandat 2687.994 kb on + strand, within IAI46_12645at 2688.038 kb on + strand, within IAI46_12645at 2688.128 kb on - strand, within IAI46_12645at 2688.247 kb on - strandat 2688.322 kb on + strandat 2688.501 kb on - strandat 2688.855 kb on - strand, within IAI46_12650at 2688.887 kb on + strand, within IAI46_12650at 2689.086 kb on - strand, within IAI46_12650

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,686,803 - IAI46_12640 0.62 +0.2
2,687,037 - IAI46_12640 0.77 +0.7
2,687,071 - IAI46_12640 0.79 +0.2
2,687,149 + IAI46_12640 0.84 +1.0
2,687,242 - IAI46_12640 0.89 +1.7
2,687,332 - +0.2
2,687,336 - +0.4
2,687,441 + +1.1
2,687,564 - +1.1
2,687,610 + -0.3
2,687,634 + +0.8
2,687,668 - +0.9
2,687,707 - +0.6
2,687,745 + -2.1
2,687,751 - +0.8
2,687,751 - +0.8
2,687,751 - +0.5
2,687,752 + -0.2
2,687,752 + +0.5
2,687,752 + +0.8
2,687,752 + +0.3
2,687,752 + +1.3
2,687,752 + -0.8
2,687,753 - -0.0
2,687,753 - -0.2
2,687,753 - -0.1
2,687,994 + IAI46_12645 0.53 +0.6
2,688,038 + IAI46_12645 0.62 +0.2
2,688,128 - IAI46_12645 0.82 -0.1
2,688,247 - +0.1
2,688,322 + +0.4
2,688,501 - +1.1
2,688,855 - IAI46_12650 0.20 +0.5
2,688,887 + IAI46_12650 0.21 +0.2
2,689,086 - IAI46_12650 0.31 +1.1

Or see this region's nucleotide sequence