Strain Fitness in Serratia liquefaciens MT49 around IAI46_12135

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12125 and IAI46_12130 overlap by 22 nucleotidesIAI46_12130 and IAI46_12135 are separated by 83 nucleotidesIAI46_12135 and IAI46_12140 are separated by 9 nucleotides IAI46_12125: IAI46_12125 - MFS transporter, at 2,566,016 to 2,567,452 _12125 IAI46_12130: IAI46_12130 - VOC family protein, at 2,567,431 to 2,567,832 _12130 IAI46_12135: IAI46_12135 - LVIVD repeat-containing protein, at 2,567,916 to 2,569,163 _12135 IAI46_12140: IAI46_12140 - sugar ABC transporter substrate-binding protein, at 2,569,173 to 2,570,246 _12140 Position (kb) 2567 2568 2569 2570Strain fitness (log2 ratio) -2 -1 0 1at 2567.105 kb on + strand, within IAI46_12125at 2567.274 kb on + strand, within IAI46_12125at 2567.348 kb on - strandat 2567.351 kb on + strandat 2567.351 kb on + strandat 2567.433 kb on - strandat 2567.653 kb on - strand, within IAI46_12130at 2567.654 kb on + strand, within IAI46_12130at 2567.655 kb on - strand, within IAI46_12130at 2567.812 kb on + strandat 2567.820 kb on + strandat 2567.820 kb on + strandat 2567.821 kb on - strandat 2567.821 kb on - strandat 2567.826 kb on + strandat 2567.827 kb on - strandat 2567.827 kb on - strandat 2567.827 kb on - strandat 2567.833 kb on - strandat 2567.856 kb on + strandat 2567.857 kb on - strandat 2567.873 kb on + strandat 2567.965 kb on + strandat 2568.107 kb on - strand, within IAI46_12135at 2568.220 kb on + strand, within IAI46_12135at 2568.345 kb on + strand, within IAI46_12135at 2568.346 kb on - strand, within IAI46_12135at 2568.466 kb on - strand, within IAI46_12135at 2568.529 kb on + strand, within IAI46_12135at 2568.530 kb on - strand, within IAI46_12135at 2568.776 kb on + strand, within IAI46_12135at 2568.850 kb on + strand, within IAI46_12135at 2569.046 kb on - strandat 2569.046 kb on - strandat 2569.051 kb on + strandat 2569.052 kb on - strandat 2569.325 kb on + strand, within IAI46_12140at 2569.482 kb on - strand, within IAI46_12140at 2569.588 kb on + strand, within IAI46_12140at 2569.746 kb on + strand, within IAI46_12140at 2569.747 kb on - strand, within IAI46_12140at 2569.747 kb on - strand, within IAI46_12140at 2569.952 kb on + strand, within IAI46_12140at 2569.953 kb on - strand, within IAI46_12140at 2569.963 kb on + strand, within IAI46_12140at 2569.964 kb on - strand, within IAI46_12140at 2570.030 kb on + strand, within IAI46_12140at 2570.091 kb on - strand, within IAI46_12140

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,567,105 + IAI46_12125 0.76 -0.2
2,567,274 + IAI46_12125 0.88 +0.6
2,567,348 - +0.7
2,567,351 + -1.3
2,567,351 + +1.1
2,567,433 - +1.6
2,567,653 - IAI46_12130 0.55 -0.3
2,567,654 + IAI46_12130 0.55 +1.1
2,567,655 - IAI46_12130 0.56 +0.7
2,567,812 + +0.7
2,567,820 + -2.6
2,567,820 + -0.8
2,567,821 - +0.7
2,567,821 - +0.0
2,567,826 + -0.7
2,567,827 - +0.1
2,567,827 - -0.0
2,567,827 - -0.1
2,567,833 - +0.5
2,567,856 + +0.5
2,567,857 - +1.1
2,567,873 + +0.3
2,567,965 + -0.4
2,568,107 - IAI46_12135 0.15 -0.9
2,568,220 + IAI46_12135 0.24 +0.5
2,568,345 + IAI46_12135 0.34 +0.3
2,568,346 - IAI46_12135 0.34 +0.1
2,568,466 - IAI46_12135 0.44 +0.7
2,568,529 + IAI46_12135 0.49 -0.7
2,568,530 - IAI46_12135 0.49 +0.1
2,568,776 + IAI46_12135 0.69 +0.5
2,568,850 + IAI46_12135 0.75 +0.7
2,569,046 - -0.2
2,569,046 - -0.2
2,569,051 + +0.1
2,569,052 - -0.4
2,569,325 + IAI46_12140 0.14 +0.8
2,569,482 - IAI46_12140 0.29 +0.1
2,569,588 + IAI46_12140 0.39 -0.3
2,569,746 + IAI46_12140 0.53 +0.6
2,569,747 - IAI46_12140 0.53 -0.7
2,569,747 - IAI46_12140 0.53 +0.0
2,569,952 + IAI46_12140 0.73 +0.3
2,569,953 - IAI46_12140 0.73 +0.7
2,569,963 + IAI46_12140 0.74 -0.2
2,569,964 - IAI46_12140 0.74 +0.3
2,570,030 + IAI46_12140 0.80 +0.2
2,570,091 - IAI46_12140 0.85 -0.2

Or see this region's nucleotide sequence