Strain Fitness in Serratia liquefaciens MT49 around IAI46_12000

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11990 and IAI46_11995 are separated by 10 nucleotidesIAI46_11995 and IAI46_12000 are separated by 31 nucleotidesIAI46_12000 and IAI46_12005 overlap by 1 nucleotidesIAI46_12005 and IAI46_12010 are separated by 58 nucleotides IAI46_11990: IAI46_11990 - MoaF N-terminal domain-containing protein, at 2,539,113 to 2,539,472 _11990 IAI46_11995: IAI46_11995 - ester cyclase, at 2,539,483 to 2,539,971 _11995 IAI46_12000: IAI46_12000 - multidrug efflux MFS transporter, at 2,540,003 to 2,541,199 _12000 IAI46_12005: IAI46_12005 - hypothetical protein, at 2,541,199 to 2,541,405 _12005 IAI46_12010: IAI46_12010 - GNAT family N-acetyltransferase, at 2,541,464 to 2,542,312 _12010 Position (kb) 2540 2541 2542Strain fitness (log2 ratio) -1 0 1 2at 2539.058 kb on - strandat 2539.081 kb on + strandat 2539.122 kb on - strandat 2539.288 kb on - strand, within IAI46_11990at 2539.288 kb on - strand, within IAI46_11990at 2539.303 kb on + strand, within IAI46_11990at 2539.392 kb on + strand, within IAI46_11990at 2539.453 kb on + strandat 2539.479 kb on + strandat 2539.480 kb on - strandat 2539.521 kb on + strandat 2539.521 kb on + strandat 2539.535 kb on - strand, within IAI46_11995at 2539.701 kb on + strand, within IAI46_11995at 2539.764 kb on + strand, within IAI46_11995at 2539.819 kb on + strand, within IAI46_11995at 2539.819 kb on + strand, within IAI46_11995at 2539.830 kb on - strand, within IAI46_11995at 2539.830 kb on - strand, within IAI46_11995at 2539.834 kb on + strand, within IAI46_11995at 2539.835 kb on - strand, within IAI46_11995at 2540.042 kb on + strandat 2540.049 kb on - strandat 2540.154 kb on + strand, within IAI46_12000at 2540.154 kb on + strand, within IAI46_12000at 2540.159 kb on - strand, within IAI46_12000at 2540.173 kb on - strand, within IAI46_12000at 2540.371 kb on + strand, within IAI46_12000at 2540.450 kb on - strand, within IAI46_12000at 2540.458 kb on + strand, within IAI46_12000at 2540.548 kb on + strand, within IAI46_12000at 2540.558 kb on + strand, within IAI46_12000at 2540.559 kb on - strand, within IAI46_12000at 2540.660 kb on - strand, within IAI46_12000at 2540.660 kb on - strand, within IAI46_12000at 2540.854 kb on + strand, within IAI46_12000at 2541.105 kb on + strandat 2541.249 kb on + strand, within IAI46_12005at 2541.252 kb on + strand, within IAI46_12005at 2541.357 kb on - strand, within IAI46_12005at 2541.426 kb on + strandat 2541.473 kb on - strandat 2541.501 kb on + strandat 2541.729 kb on + strand, within IAI46_12010at 2542.125 kb on + strand, within IAI46_12010

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,539,058 - +0.1
2,539,081 + +0.1
2,539,122 - +0.4
2,539,288 - IAI46_11990 0.49 -0.2
2,539,288 - IAI46_11990 0.49 +0.1
2,539,303 + IAI46_11990 0.53 +0.2
2,539,392 + IAI46_11990 0.78 +0.5
2,539,453 + +0.4
2,539,479 + +0.4
2,539,480 - +1.7
2,539,521 + +0.1
2,539,521 + +0.4
2,539,535 - IAI46_11995 0.11 -0.9
2,539,701 + IAI46_11995 0.45 +0.0
2,539,764 + IAI46_11995 0.57 -0.1
2,539,819 + IAI46_11995 0.69 -1.1
2,539,819 + IAI46_11995 0.69 -0.5
2,539,830 - IAI46_11995 0.71 -0.7
2,539,830 - IAI46_11995 0.71 +0.8
2,539,834 + IAI46_11995 0.72 -0.2
2,539,835 - IAI46_11995 0.72 +1.3
2,540,042 + -1.2
2,540,049 - +1.3
2,540,154 + IAI46_12000 0.13 +0.7
2,540,154 + IAI46_12000 0.13 +0.0
2,540,159 - IAI46_12000 0.13 +1.9
2,540,173 - IAI46_12000 0.14 +0.8
2,540,371 + IAI46_12000 0.31 +0.9
2,540,450 - IAI46_12000 0.37 +0.5
2,540,458 + IAI46_12000 0.38 +0.2
2,540,548 + IAI46_12000 0.46 +0.1
2,540,558 + IAI46_12000 0.46 -0.0
2,540,559 - IAI46_12000 0.46 +1.0
2,540,660 - IAI46_12000 0.55 +0.2
2,540,660 - IAI46_12000 0.55 +0.1
2,540,854 + IAI46_12000 0.71 -0.6
2,541,105 + +1.4
2,541,249 + IAI46_12005 0.24 +0.1
2,541,252 + IAI46_12005 0.26 +0.3
2,541,357 - IAI46_12005 0.76 -0.6
2,541,426 + +1.1
2,541,473 - +0.6
2,541,501 + -0.6
2,541,729 + IAI46_12010 0.31 +0.4
2,542,125 + IAI46_12010 0.78 -0.8

Or see this region's nucleotide sequence