Strain Fitness in Serratia liquefaciens MT49 around IAI46_11680

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11675 and IAI46_11680 are separated by 129 nucleotidesIAI46_11680 and IAI46_11685 are separated by 159 nucleotides IAI46_11675: IAI46_11675 - MFS transporter, at 2,463,664 to 2,464,929 _11675 IAI46_11680: IAI46_11680 - LysR family transcriptional regulator, at 2,465,059 to 2,465,949 _11680 IAI46_11685: IAI46_11685 - ROK family transcriptional regulator, at 2,466,109 to 2,467,326 _11685 Position (kb) 2465 2466Strain fitness (log2 ratio) -1 0 1at 2464.061 kb on + strand, within IAI46_11675at 2464.061 kb on + strand, within IAI46_11675at 2464.062 kb on - strand, within IAI46_11675at 2464.076 kb on + strand, within IAI46_11675at 2464.149 kb on - strand, within IAI46_11675at 2464.252 kb on - strand, within IAI46_11675at 2464.300 kb on - strand, within IAI46_11675at 2464.433 kb on + strand, within IAI46_11675at 2464.433 kb on + strand, within IAI46_11675at 2464.434 kb on - strand, within IAI46_11675at 2464.484 kb on + strand, within IAI46_11675at 2464.541 kb on - strand, within IAI46_11675at 2464.567 kb on - strand, within IAI46_11675at 2464.770 kb on - strand, within IAI46_11675at 2465.373 kb on + strand, within IAI46_11680at 2465.725 kb on + strand, within IAI46_11680at 2465.725 kb on + strand, within IAI46_11680at 2465.726 kb on - strand, within IAI46_11680at 2465.726 kb on - strand, within IAI46_11680at 2465.795 kb on + strand, within IAI46_11680at 2466.435 kb on - strand, within IAI46_11685at 2466.435 kb on - strand, within IAI46_11685at 2466.616 kb on + strand, within IAI46_11685at 2466.630 kb on + strand, within IAI46_11685at 2466.630 kb on + strand, within IAI46_11685at 2466.630 kb on + strand, within IAI46_11685at 2466.719 kb on + strand, within IAI46_11685

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,464,061 + IAI46_11675 0.31 +0.9
2,464,061 + IAI46_11675 0.31 +0.6
2,464,062 - IAI46_11675 0.31 -0.4
2,464,076 + IAI46_11675 0.33 +0.3
2,464,149 - IAI46_11675 0.38 -1.4
2,464,252 - IAI46_11675 0.46 +0.2
2,464,300 - IAI46_11675 0.50 +0.7
2,464,433 + IAI46_11675 0.61 +0.4
2,464,433 + IAI46_11675 0.61 +0.5
2,464,434 - IAI46_11675 0.61 -0.6
2,464,484 + IAI46_11675 0.65 +1.2
2,464,541 - IAI46_11675 0.69 -0.1
2,464,567 - IAI46_11675 0.71 -0.5
2,464,770 - IAI46_11675 0.87 +0.7
2,465,373 + IAI46_11680 0.35 +0.2
2,465,725 + IAI46_11680 0.75 +0.4
2,465,725 + IAI46_11680 0.75 +0.2
2,465,726 - IAI46_11680 0.75 +0.2
2,465,726 - IAI46_11680 0.75 +0.3
2,465,795 + IAI46_11680 0.83 +0.2
2,466,435 - IAI46_11685 0.27 +0.7
2,466,435 - IAI46_11685 0.27 +1.1
2,466,616 + IAI46_11685 0.42 -0.5
2,466,630 + IAI46_11685 0.43 +0.4
2,466,630 + IAI46_11685 0.43 +0.6
2,466,630 + IAI46_11685 0.43 -0.6
2,466,719 + IAI46_11685 0.50 -0.2

Or see this region's nucleotide sequence