Strain Fitness in Serratia liquefaciens MT49 around IAI46_11140

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11130 and IAI46_11135 overlap by 4 nucleotidesIAI46_11135 and IAI46_11140 are separated by 54 nucleotidesIAI46_11140 and IAI46_11145 are separated by 555 nucleotidesIAI46_11145 and IAI46_11150 are separated by 14 nucleotides IAI46_11130: IAI46_11130 - FAD-binding oxidoreductase, at 2,352,580 to 2,355,636 _11130 IAI46_11135: IAI46_11135 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 2,355,633 to 2,356,049 _11135 IAI46_11140: IAI46_11140 - hypothetical protein, at 2,356,104 to 2,356,508 _11140 IAI46_11145: IAI46_11145 - Fe-S cluster assembly scaffold SufA, at 2,357,064 to 2,357,435 _11145 IAI46_11150: IAI46_11150 - Fe-S cluster assembly protein SufB, at 2,357,450 to 2,358,946 _11150 Position (kb) 2356 2357Strain fitness (log2 ratio) -1 0 1 2at 2355.205 kb on + strand, within IAI46_11130at 2355.207 kb on + strand, within IAI46_11130at 2355.320 kb on - strand, within IAI46_11130at 2355.422 kb on + strandat 2355.449 kb on - strandat 2355.497 kb on + strandat 2355.497 kb on + strandat 2355.497 kb on + strandat 2355.498 kb on - strandat 2355.498 kb on - strandat 2355.498 kb on - strandat 2355.498 kb on - strandat 2355.597 kb on - strandat 2355.692 kb on + strand, within IAI46_11135at 2355.693 kb on - strand, within IAI46_11135at 2355.693 kb on - strand, within IAI46_11135at 2355.693 kb on - strand, within IAI46_11135at 2355.738 kb on + strand, within IAI46_11135at 2355.846 kb on + strand, within IAI46_11135at 2355.874 kb on + strand, within IAI46_11135at 2355.875 kb on - strand, within IAI46_11135at 2356.105 kb on + strandat 2356.283 kb on + strand, within IAI46_11140at 2356.309 kb on + strand, within IAI46_11140at 2356.310 kb on - strand, within IAI46_11140at 2356.310 kb on - strand, within IAI46_11140at 2356.310 kb on - strand, within IAI46_11140at 2356.460 kb on + strand, within IAI46_11140at 2356.460 kb on + strand, within IAI46_11140at 2356.634 kb on - strandat 2356.662 kb on + strandat 2356.841 kb on + strandat 2357.016 kb on + strandat 2357.016 kb on + strandat 2357.056 kb on + strandat 2357.063 kb on + strandat 2357.132 kb on + strand, within IAI46_11145at 2357.154 kb on - strand, within IAI46_11145at 2357.158 kb on + strand, within IAI46_11145at 2357.229 kb on + strand, within IAI46_11145at 2357.230 kb on - strand, within IAI46_11145at 2357.298 kb on + strand, within IAI46_11145at 2357.299 kb on - strand, within IAI46_11145at 2357.372 kb on - strand, within IAI46_11145at 2357.372 kb on - strand, within IAI46_11145at 2357.390 kb on + strand, within IAI46_11145at 2357.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,355,205 + IAI46_11130 0.86 -0.4
2,355,207 + IAI46_11130 0.86 -0.9
2,355,320 - IAI46_11130 0.90 -0.8
2,355,422 + -0.6
2,355,449 - -0.7
2,355,497 + -1.0
2,355,497 + +0.1
2,355,497 + +1.2
2,355,498 - -0.8
2,355,498 - +0.2
2,355,498 - +0.3
2,355,498 - -0.4
2,355,597 - -0.1
2,355,692 + IAI46_11135 0.14 -0.7
2,355,693 - IAI46_11135 0.14 -1.0
2,355,693 - IAI46_11135 0.14 -0.8
2,355,693 - IAI46_11135 0.14 +0.2
2,355,738 + IAI46_11135 0.25 -0.3
2,355,846 + IAI46_11135 0.51 +0.3
2,355,874 + IAI46_11135 0.58 +0.2
2,355,875 - IAI46_11135 0.58 +0.4
2,356,105 + +0.9
2,356,283 + IAI46_11140 0.44 +0.6
2,356,309 + IAI46_11140 0.51 +0.2
2,356,310 - IAI46_11140 0.51 +0.3
2,356,310 - IAI46_11140 0.51 +1.2
2,356,310 - IAI46_11140 0.51 -0.3
2,356,460 + IAI46_11140 0.88 -1.2
2,356,460 + IAI46_11140 0.88 +0.6
2,356,634 - +0.6
2,356,662 + -0.4
2,356,841 + -0.2
2,357,016 + -0.3
2,357,016 + -0.1
2,357,056 + -0.0
2,357,063 + -0.7
2,357,132 + IAI46_11145 0.18 +0.7
2,357,154 - IAI46_11145 0.24 +0.3
2,357,158 + IAI46_11145 0.25 +0.9
2,357,229 + IAI46_11145 0.44 +0.9
2,357,230 - IAI46_11145 0.45 -1.2
2,357,298 + IAI46_11145 0.63 -0.5
2,357,299 - IAI46_11145 0.63 +2.0
2,357,372 - IAI46_11145 0.83 -0.2
2,357,372 - IAI46_11145 0.83 -0.1
2,357,390 + IAI46_11145 0.88 +0.7
2,357,466 + +0.6

Or see this region's nucleotide sequence