Strain Fitness in Serratia liquefaciens MT49 around IAI46_10815

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10810 and IAI46_10815 are separated by 49 nucleotidesIAI46_10815 and IAI46_10820 are separated by 211 nucleotides IAI46_10810: IAI46_10810 - protease HtpX, at 2,285,818 to 2,286,696 _10810 IAI46_10815: IAI46_10815 - MFS transporter, at 2,286,746 to 2,288,140 _10815 IAI46_10820: IAI46_10820 - DNA-binding transcriptional regulator KdgR, at 2,288,352 to 2,289,143 _10820 Position (kb) 2286 2287 2288 2289Strain fitness (log2 ratio) -2 -1 0 1 2at 2285.798 kb on + strandat 2285.817 kb on + strandat 2285.826 kb on + strandat 2285.828 kb on + strandat 2286.685 kb on + strandat 2286.695 kb on - strandat 2286.927 kb on - strand, within IAI46_10815at 2287.359 kb on - strand, within IAI46_10815at 2287.439 kb on + strand, within IAI46_10815at 2287.575 kb on + strand, within IAI46_10815at 2287.575 kb on + strand, within IAI46_10815at 2287.575 kb on + strand, within IAI46_10815at 2287.746 kb on + strand, within IAI46_10815at 2287.750 kb on + strand, within IAI46_10815at 2287.751 kb on - strand, within IAI46_10815at 2287.893 kb on + strand, within IAI46_10815at 2287.893 kb on + strand, within IAI46_10815at 2287.893 kb on + strand, within IAI46_10815at 2288.069 kb on - strandat 2288.129 kb on - strandat 2288.174 kb on + strandat 2288.175 kb on - strandat 2288.175 kb on - strandat 2288.183 kb on - strandat 2288.295 kb on - strandat 2288.351 kb on + strandat 2288.624 kb on + strand, within IAI46_10820at 2288.710 kb on - strand, within IAI46_10820at 2288.710 kb on - strand, within IAI46_10820at 2288.717 kb on + strand, within IAI46_10820at 2288.718 kb on - strand, within IAI46_10820at 2288.733 kb on + strand, within IAI46_10820at 2288.734 kb on - strand, within IAI46_10820at 2288.748 kb on + strand, within IAI46_10820at 2288.749 kb on - strand, within IAI46_10820at 2288.859 kb on - strand, within IAI46_10820at 2288.975 kb on + strand, within IAI46_10820at 2289.049 kb on - strand, within IAI46_10820at 2289.072 kb on + strandat 2289.133 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,285,798 + -0.2
2,285,817 + -1.0
2,285,826 + +0.7
2,285,828 + +0.5
2,286,685 + +0.8
2,286,695 - +0.9
2,286,927 - IAI46_10815 0.13 +0.6
2,287,359 - IAI46_10815 0.44 +1.2
2,287,439 + IAI46_10815 0.50 -0.1
2,287,575 + IAI46_10815 0.59 -1.1
2,287,575 + IAI46_10815 0.59 -0.7
2,287,575 + IAI46_10815 0.59 -0.0
2,287,746 + IAI46_10815 0.72 -0.7
2,287,750 + IAI46_10815 0.72 +2.2
2,287,751 - IAI46_10815 0.72 +0.8
2,287,893 + IAI46_10815 0.82 -0.1
2,287,893 + IAI46_10815 0.82 +0.9
2,287,893 + IAI46_10815 0.82 +0.5
2,288,069 - +0.3
2,288,129 - -0.4
2,288,174 + +0.2
2,288,175 - +0.2
2,288,175 - +1.4
2,288,183 - -0.2
2,288,295 - +0.1
2,288,351 + +0.4
2,288,624 + IAI46_10820 0.34 +1.8
2,288,710 - IAI46_10820 0.45 -2.1
2,288,710 - IAI46_10820 0.45 -0.0
2,288,717 + IAI46_10820 0.46 -0.5
2,288,718 - IAI46_10820 0.46 +0.6
2,288,733 + IAI46_10820 0.48 -0.9
2,288,734 - IAI46_10820 0.48 -0.7
2,288,748 + IAI46_10820 0.50 +0.5
2,288,749 - IAI46_10820 0.50 -0.0
2,288,859 - IAI46_10820 0.64 +0.1
2,288,975 + IAI46_10820 0.79 +0.3
2,289,049 - IAI46_10820 0.88 +0.8
2,289,072 + -0.1
2,289,133 - -0.1

Or see this region's nucleotide sequence