Strain Fitness in Serratia liquefaciens MT49 around IAI46_10725

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10715 and IAI46_10720 are separated by 365 nucleotidesIAI46_10720 and IAI46_10725 are separated by 454 nucleotidesIAI46_10725 and IAI46_10730 are separated by 1 nucleotidesIAI46_10730 and IAI46_10735 are separated by 54 nucleotides IAI46_10715: IAI46_10715 - hypothetical protein, at 2,267,230 to 2,267,439 _10715 IAI46_10720: IAI46_10720 - hypothetical protein, at 2,267,805 to 2,267,942 _10720 IAI46_10725: IAI46_10725 - ASCH domain-containing protein, at 2,268,397 to 2,268,789 _10725 IAI46_10730: IAI46_10730 - hypothetical protein, at 2,268,791 to 2,269,393 _10730 IAI46_10735: IAI46_10735 - DUF1480 family protein, at 2,269,448 to 2,269,687 _10735 Position (kb) 2268 2269Strain fitness (log2 ratio) -1 0 1 2at 2267.502 kb on - strandat 2267.502 kb on - strandat 2267.575 kb on + strandat 2267.578 kb on + strandat 2267.579 kb on - strandat 2267.592 kb on - strandat 2267.677 kb on + strandat 2267.678 kb on - strandat 2267.713 kb on - strandat 2267.716 kb on + strandat 2268.018 kb on + strandat 2268.018 kb on + strandat 2268.019 kb on - strandat 2268.291 kb on - strandat 2268.303 kb on + strandat 2268.347 kb on + strandat 2268.354 kb on + strandat 2268.354 kb on + strandat 2268.355 kb on - strandat 2268.378 kb on + strandat 2268.378 kb on + strandat 2268.557 kb on + strand, within IAI46_10725at 2268.557 kb on + strand, within IAI46_10725at 2268.689 kb on - strand, within IAI46_10725at 2268.725 kb on - strand, within IAI46_10725at 2268.725 kb on - strand, within IAI46_10725at 2268.809 kb on + strandat 2268.809 kb on + strandat 2268.809 kb on + strandat 2268.809 kb on + strandat 2268.809 kb on + strandat 2268.810 kb on - strandat 2268.810 kb on - strandat 2268.884 kb on - strand, within IAI46_10730at 2268.923 kb on - strand, within IAI46_10730at 2269.186 kb on + strand, within IAI46_10730at 2269.386 kb on + strandat 2269.387 kb on - strandat 2269.489 kb on - strand, within IAI46_10735at 2269.501 kb on - strand, within IAI46_10735at 2269.501 kb on - strand, within IAI46_10735at 2269.562 kb on + strand, within IAI46_10735at 2269.563 kb on - strand, within IAI46_10735at 2269.609 kb on + strand, within IAI46_10735at 2269.740 kb on + strandat 2269.740 kb on + strandat 2269.753 kb on + strandat 2269.754 kb on - strandat 2269.754 kb on - strandat 2269.776 kb on - strandat 2269.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,267,502 - +0.1
2,267,502 - -1.2
2,267,575 + +0.3
2,267,578 + -1.3
2,267,579 - +0.7
2,267,592 - +0.4
2,267,677 + -0.6
2,267,678 - +1.1
2,267,713 - -0.0
2,267,716 + +0.2
2,268,018 + +1.6
2,268,018 + +1.5
2,268,019 - -0.2
2,268,291 - +0.9
2,268,303 + +0.1
2,268,347 + +0.1
2,268,354 + -0.3
2,268,354 + -0.2
2,268,355 - -1.1
2,268,378 + +0.0
2,268,378 + +0.2
2,268,557 + IAI46_10725 0.41 +0.3
2,268,557 + IAI46_10725 0.41 +0.6
2,268,689 - IAI46_10725 0.74 -0.5
2,268,725 - IAI46_10725 0.83 -0.6
2,268,725 - IAI46_10725 0.83 +0.2
2,268,809 + +0.6
2,268,809 + +0.6
2,268,809 + +0.2
2,268,809 + -0.1
2,268,809 + +0.1
2,268,810 - -0.6
2,268,810 - +0.9
2,268,884 - IAI46_10730 0.15 +0.8
2,268,923 - IAI46_10730 0.22 -0.5
2,269,186 + IAI46_10730 0.66 -0.1
2,269,386 + +0.9
2,269,387 - -1.0
2,269,489 - IAI46_10735 0.17 -0.9
2,269,501 - IAI46_10735 0.22 +0.0
2,269,501 - IAI46_10735 0.22 +0.2
2,269,562 + IAI46_10735 0.47 +0.1
2,269,563 - IAI46_10735 0.48 -0.8
2,269,609 + IAI46_10735 0.67 -0.9
2,269,740 + +1.5
2,269,740 + +0.2
2,269,753 + +0.2
2,269,754 - -0.5
2,269,754 - +1.9
2,269,776 - +0.3
2,269,783 - +0.4

Or see this region's nucleotide sequence