Strain Fitness in Serratia liquefaciens MT49 around IAI46_10600

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10590 and IAI46_10595 are separated by 111 nucleotidesIAI46_10595 and IAI46_10600 are separated by 12 nucleotidesIAI46_10600 and IAI46_10605 are separated by 281 nucleotides IAI46_10590: IAI46_10590 - hypothetical protein, at 2,236,839 to 2,237,312 _10590 IAI46_10595: IAI46_10595 - chorismate mutase, at 2,237,424 to 2,237,954 _10595 IAI46_10600: IAI46_10600 - beta-lactamase family protein, at 2,237,967 to 2,239,502 _10600 IAI46_10605: IAI46_10605 - N-formylglutamate deformylase, at 2,239,784 to 2,240,587 _10605 Position (kb) 2237 2238 2239 2240Strain fitness (log2 ratio) -2 -1 0 1at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2237.019 kb on - strand, within IAI46_10590at 2237.089 kb on - strand, within IAI46_10590at 2237.525 kb on + strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.660 kb on + strand, within IAI46_10595at 2237.661 kb on - strand, within IAI46_10595at 2237.870 kb on + strand, within IAI46_10595at 2238.030 kb on + strandat 2238.037 kb on + strandat 2238.326 kb on + strand, within IAI46_10600at 2238.327 kb on - strand, within IAI46_10600at 2238.446 kb on - strand, within IAI46_10600at 2238.729 kb on + strand, within IAI46_10600at 2238.899 kb on - strand, within IAI46_10600at 2239.022 kb on + strand, within IAI46_10600at 2239.025 kb on - strand, within IAI46_10600at 2239.025 kb on - strand, within IAI46_10600at 2239.063 kb on - strand, within IAI46_10600at 2239.309 kb on + strand, within IAI46_10600at 2239.409 kb on + strandat 2239.529 kb on + strandat 2239.876 kb on - strand, within IAI46_10605at 2239.882 kb on - strand, within IAI46_10605at 2239.882 kb on - strand, within IAI46_10605at 2239.896 kb on + strand, within IAI46_10605at 2239.969 kb on - strand, within IAI46_10605at 2239.969 kb on - strand, within IAI46_10605at 2239.990 kb on + strand, within IAI46_10605at 2239.991 kb on - strand, within IAI46_10605at 2240.102 kb on - strand, within IAI46_10605at 2240.300 kb on + strand, within IAI46_10605at 2240.300 kb on + strand, within IAI46_10605at 2240.300 kb on + strand, within IAI46_10605at 2240.311 kb on - strand, within IAI46_10605at 2240.330 kb on - strand, within IAI46_10605at 2240.332 kb on + strand, within IAI46_10605at 2240.333 kb on - strand, within IAI46_10605at 2240.333 kb on - strand, within IAI46_10605at 2240.333 kb on - strand, within IAI46_10605at 2240.334 kb on + strand, within IAI46_10605at 2240.334 kb on + strand, within IAI46_10605at 2240.385 kb on + strand, within IAI46_10605at 2240.386 kb on - strand, within IAI46_10605at 2240.399 kb on + strand, within IAI46_10605at 2240.430 kb on + strand, within IAI46_10605

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,236,976 + IAI46_10590 0.29 -0.1
2,236,976 + IAI46_10590 0.29 -0.0
2,236,976 + IAI46_10590 0.29 +0.1
2,237,019 - IAI46_10590 0.38 -2.0
2,237,089 - IAI46_10590 0.53 -0.1
2,237,525 + IAI46_10595 0.19 +0.2
2,237,526 - IAI46_10595 0.19 +1.1
2,237,526 - IAI46_10595 0.19 -1.2
2,237,526 - IAI46_10595 0.19 +0.3
2,237,660 + IAI46_10595 0.44 +0.7
2,237,661 - IAI46_10595 0.45 +0.2
2,237,870 + IAI46_10595 0.84 +0.2
2,238,030 + -0.4
2,238,037 + -1.5
2,238,326 + IAI46_10600 0.23 +0.5
2,238,327 - IAI46_10600 0.23 -0.1
2,238,446 - IAI46_10600 0.31 +0.6
2,238,729 + IAI46_10600 0.50 +0.3
2,238,899 - IAI46_10600 0.61 -0.2
2,239,022 + IAI46_10600 0.69 -1.1
2,239,025 - IAI46_10600 0.69 +0.9
2,239,025 - IAI46_10600 0.69 -0.2
2,239,063 - IAI46_10600 0.71 +0.8
2,239,309 + IAI46_10600 0.87 -0.3
2,239,409 + +0.5
2,239,529 + +0.4
2,239,876 - IAI46_10605 0.11 +0.4
2,239,882 - IAI46_10605 0.12 +0.0
2,239,882 - IAI46_10605 0.12 -0.1
2,239,896 + IAI46_10605 0.14 -0.7
2,239,969 - IAI46_10605 0.23 +0.5
2,239,969 - IAI46_10605 0.23 +0.7
2,239,990 + IAI46_10605 0.26 -1.1
2,239,991 - IAI46_10605 0.26 +0.1
2,240,102 - IAI46_10605 0.40 +1.2
2,240,300 + IAI46_10605 0.64 +0.1
2,240,300 + IAI46_10605 0.64 -0.1
2,240,300 + IAI46_10605 0.64 -0.2
2,240,311 - IAI46_10605 0.66 -0.5
2,240,330 - IAI46_10605 0.68 -0.5
2,240,332 + IAI46_10605 0.68 +0.2
2,240,333 - IAI46_10605 0.68 +0.8
2,240,333 - IAI46_10605 0.68 +0.6
2,240,333 - IAI46_10605 0.68 -1.4
2,240,334 + IAI46_10605 0.68 -1.8
2,240,334 + IAI46_10605 0.68 -0.2
2,240,385 + IAI46_10605 0.75 +0.4
2,240,386 - IAI46_10605 0.75 +0.5
2,240,399 + IAI46_10605 0.76 -0.4
2,240,430 + IAI46_10605 0.80 -1.0

Or see this region's nucleotide sequence