Strain Fitness in Serratia liquefaciens MT49 around IAI46_10585

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10580 and IAI46_10585 are separated by 55 nucleotidesIAI46_10585 and IAI46_10590 are separated by 462 nucleotides IAI46_10580: IAI46_10580 - nucleoside-specific channel-forming protein Tsx, at 2,235,266 to 2,236,141 _10580 IAI46_10585: IAI46_10585 - hypothetical protein, at 2,236,197 to 2,236,376 _10585 IAI46_10590: IAI46_10590 - hypothetical protein, at 2,236,839 to 2,237,312 _10590 Position (kb) 2236 2237Strain fitness (log2 ratio) -3 -2 -1 0 1at 2235.248 kb on + strandat 2235.294 kb on + strandat 2235.295 kb on - strandat 2235.295 kb on - strandat 2235.311 kb on + strandat 2235.311 kb on + strandat 2235.312 kb on - strandat 2235.350 kb on + strandat 2235.354 kb on + strand, within IAI46_10580at 2235.396 kb on - strand, within IAI46_10580at 2235.480 kb on - strand, within IAI46_10580at 2235.485 kb on + strand, within IAI46_10580at 2235.485 kb on + strand, within IAI46_10580at 2235.535 kb on + strand, within IAI46_10580at 2235.535 kb on + strand, within IAI46_10580at 2235.536 kb on - strand, within IAI46_10580at 2235.562 kb on + strand, within IAI46_10580at 2235.653 kb on + strand, within IAI46_10580at 2235.653 kb on + strand, within IAI46_10580at 2235.654 kb on - strand, within IAI46_10580at 2235.654 kb on - strand, within IAI46_10580at 2235.654 kb on - strand, within IAI46_10580at 2235.654 kb on - strand, within IAI46_10580at 2235.659 kb on + strand, within IAI46_10580at 2235.659 kb on + strand, within IAI46_10580at 2235.659 kb on + strand, within IAI46_10580at 2235.659 kb on + strand, within IAI46_10580at 2235.660 kb on - strand, within IAI46_10580at 2235.660 kb on - strand, within IAI46_10580at 2235.660 kb on - strand, within IAI46_10580at 2235.660 kb on - strand, within IAI46_10580at 2235.701 kb on + strand, within IAI46_10580at 2235.703 kb on + strand, within IAI46_10580at 2235.704 kb on - strand, within IAI46_10580at 2235.704 kb on - strand, within IAI46_10580at 2235.761 kb on + strand, within IAI46_10580at 2235.761 kb on + strand, within IAI46_10580at 2235.761 kb on + strand, within IAI46_10580at 2235.762 kb on - strand, within IAI46_10580at 2235.762 kb on - strand, within IAI46_10580at 2235.836 kb on + strand, within IAI46_10580at 2235.836 kb on + strand, within IAI46_10580at 2235.836 kb on + strand, within IAI46_10580at 2235.837 kb on - strand, within IAI46_10580at 2235.879 kb on - strand, within IAI46_10580at 2235.999 kb on - strand, within IAI46_10580at 2236.013 kb on + strand, within IAI46_10580at 2236.031 kb on + strand, within IAI46_10580at 2236.113 kb on - strandat 2236.115 kb on + strandat 2236.115 kb on + strandat 2236.116 kb on - strandat 2236.152 kb on + strandat 2236.254 kb on + strand, within IAI46_10585at 2236.355 kb on - strand, within IAI46_10585at 2236.457 kb on - strandat 2236.457 kb on - strandat 2236.556 kb on + strandat 2236.556 kb on + strandat 2236.747 kb on + strandat 2236.747 kb on + strandat 2236.748 kb on - strandat 2236.758 kb on + strandat 2236.802 kb on + strandat 2236.813 kb on + strandat 2236.814 kb on - strandat 2236.814 kb on - strandat 2236.854 kb on - strandat 2236.867 kb on + strandat 2236.958 kb on + strand, within IAI46_10590at 2236.959 kb on - strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2237.019 kb on - strand, within IAI46_10590at 2237.089 kb on - strand, within IAI46_10590

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,235,248 + -0.6
2,235,294 + +0.7
2,235,295 - -0.1
2,235,295 - +0.2
2,235,311 + +0.2
2,235,311 + +0.1
2,235,312 - -3.4
2,235,350 + -0.1
2,235,354 + IAI46_10580 0.10 +0.4
2,235,396 - IAI46_10580 0.15 +1.5
2,235,480 - IAI46_10580 0.24 +0.1
2,235,485 + IAI46_10580 0.25 -0.9
2,235,485 + IAI46_10580 0.25 -0.1
2,235,535 + IAI46_10580 0.31 -0.8
2,235,535 + IAI46_10580 0.31 +0.4
2,235,536 - IAI46_10580 0.31 +0.2
2,235,562 + IAI46_10580 0.34 -0.5
2,235,653 + IAI46_10580 0.44 -0.1
2,235,653 + IAI46_10580 0.44 +0.4
2,235,654 - IAI46_10580 0.44 -2.0
2,235,654 - IAI46_10580 0.44 -1.0
2,235,654 - IAI46_10580 0.44 -0.4
2,235,654 - IAI46_10580 0.44 +0.2
2,235,659 + IAI46_10580 0.45 +1.0
2,235,659 + IAI46_10580 0.45 +0.9
2,235,659 + IAI46_10580 0.45 +0.4
2,235,659 + IAI46_10580 0.45 -1.8
2,235,660 - IAI46_10580 0.45 -0.2
2,235,660 - IAI46_10580 0.45 +1.2
2,235,660 - IAI46_10580 0.45 +0.9
2,235,660 - IAI46_10580 0.45 +0.1
2,235,701 + IAI46_10580 0.50 +0.7
2,235,703 + IAI46_10580 0.50 +0.2
2,235,704 - IAI46_10580 0.50 -0.9
2,235,704 - IAI46_10580 0.50 -0.8
2,235,761 + IAI46_10580 0.57 +0.1
2,235,761 + IAI46_10580 0.57 -0.1
2,235,761 + IAI46_10580 0.57 -0.1
2,235,762 - IAI46_10580 0.57 +1.5
2,235,762 - IAI46_10580 0.57 +0.3
2,235,836 + IAI46_10580 0.65 +0.6
2,235,836 + IAI46_10580 0.65 -0.1
2,235,836 + IAI46_10580 0.65 +0.8
2,235,837 - IAI46_10580 0.65 -0.4
2,235,879 - IAI46_10580 0.70 +0.2
2,235,999 - IAI46_10580 0.84 +0.0
2,236,013 + IAI46_10580 0.85 -0.8
2,236,031 + IAI46_10580 0.87 +0.2
2,236,113 - -0.2
2,236,115 + -0.9
2,236,115 + -0.5
2,236,116 - +0.2
2,236,152 + -0.6
2,236,254 + IAI46_10585 0.32 +0.6
2,236,355 - IAI46_10585 0.88 +0.1
2,236,457 - -1.0
2,236,457 - +0.2
2,236,556 + +0.2
2,236,556 + -1.6
2,236,747 + -0.1
2,236,747 + +0.2
2,236,748 - +0.9
2,236,758 + -0.6
2,236,802 + -0.0
2,236,813 + +0.8
2,236,814 - +1.2
2,236,814 - +0.2
2,236,854 - +0.1
2,236,867 + +0.3
2,236,958 + IAI46_10590 0.25 +0.0
2,236,959 - IAI46_10590 0.25 +0.9
2,236,976 + IAI46_10590 0.29 -0.1
2,236,976 + IAI46_10590 0.29 -0.0
2,236,976 + IAI46_10590 0.29 +0.1
2,237,019 - IAI46_10590 0.38 -2.0
2,237,089 - IAI46_10590 0.53 -0.1

Or see this region's nucleotide sequence