Strain Fitness in Serratia liquefaciens MT49 around IAI46_09920

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09915 and IAI46_09920 are separated by 292 nucleotidesIAI46_09920 and IAI46_09925 are separated by 229 nucleotides IAI46_09915: IAI46_09915 - glycine zipper 2TM domain-containing protein, at 2,095,923 to 2,096,459 _09915 IAI46_09920: IAI46_09920 - Rrf2 family transcriptional regulator, at 2,096,752 to 2,097,237 _09920 IAI46_09925: IAI46_09925 - multidrug efflux RND transporter permease subunit SdeB, at 2,097,467 to 2,100,610 _09925 Position (kb) 2096 2097 2098Strain fitness (log2 ratio) -3 -2 -1 0 1at 2095.876 kb on - strandat 2095.958 kb on + strandat 2096.309 kb on + strand, within IAI46_09915at 2096.358 kb on + strand, within IAI46_09915at 2096.494 kb on - strandat 2096.494 kb on - strandat 2096.530 kb on + strandat 2096.534 kb on - strandat 2096.554 kb on - strandat 2096.558 kb on - strandat 2096.595 kb on + strandat 2096.596 kb on - strandat 2096.608 kb on - strandat 2096.612 kb on + strandat 2096.645 kb on - strandat 2096.662 kb on + strandat 2096.663 kb on - strandat 2096.665 kb on - strandat 2096.668 kb on - strandat 2096.789 kb on + strandat 2096.789 kb on + strandat 2096.793 kb on + strandat 2096.793 kb on + strandat 2097.009 kb on + strand, within IAI46_09920at 2097.193 kb on + strandat 2097.193 kb on + strandat 2097.195 kb on + strandat 2097.277 kb on + strandat 2097.355 kb on + strandat 2097.468 kb on + strandat 2097.490 kb on + strandat 2097.502 kb on + strandat 2097.502 kb on + strandat 2097.519 kb on + strandat 2097.581 kb on - strandat 2097.581 kb on - strandat 2097.584 kb on - strandat 2097.650 kb on - strandat 2097.659 kb on - strandat 2097.795 kb on - strand, within IAI46_09925at 2097.806 kb on + strand, within IAI46_09925at 2097.807 kb on - strand, within IAI46_09925at 2097.918 kb on + strand, within IAI46_09925at 2097.970 kb on + strand, within IAI46_09925at 2097.970 kb on + strand, within IAI46_09925at 2097.971 kb on - strand, within IAI46_09925at 2098.030 kb on + strand, within IAI46_09925at 2098.030 kb on + strand, within IAI46_09925at 2098.030 kb on + strand, within IAI46_09925at 2098.048 kb on + strand, within IAI46_09925at 2098.049 kb on - strand, within IAI46_09925at 2098.049 kb on - strand, within IAI46_09925at 2098.049 kb on - strand, within IAI46_09925at 2098.168 kb on - strand, within IAI46_09925

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,095,876 - +0.3
2,095,958 + -0.4
2,096,309 + IAI46_09915 0.72 -2.0
2,096,358 + IAI46_09915 0.81 +1.0
2,096,494 - -0.2
2,096,494 - -0.9
2,096,530 + +1.2
2,096,534 - -0.7
2,096,554 - +0.8
2,096,558 - -1.6
2,096,595 + +1.1
2,096,596 - -0.2
2,096,608 - -0.5
2,096,612 + -1.1
2,096,645 - +0.7
2,096,662 + +1.4
2,096,663 - -1.2
2,096,665 - -0.2
2,096,668 - +0.8
2,096,789 + +0.1
2,096,789 + -0.9
2,096,793 + -3.4
2,096,793 + +0.3
2,097,009 + IAI46_09920 0.53 +0.6
2,097,193 + +1.2
2,097,193 + -0.1
2,097,195 + +0.6
2,097,277 + -1.6
2,097,355 + -0.0
2,097,468 + -0.1
2,097,490 + +0.3
2,097,502 + -0.6
2,097,502 + +0.6
2,097,519 + -0.9
2,097,581 - -0.0
2,097,581 - -0.2
2,097,584 - -0.2
2,097,650 - +1.2
2,097,659 - +0.6
2,097,795 - IAI46_09925 0.10 -0.8
2,097,806 + IAI46_09925 0.11 +0.6
2,097,807 - IAI46_09925 0.11 -0.4
2,097,918 + IAI46_09925 0.14 +0.4
2,097,970 + IAI46_09925 0.16 -0.3
2,097,970 + IAI46_09925 0.16 +1.1
2,097,971 - IAI46_09925 0.16 +0.4
2,098,030 + IAI46_09925 0.18 +0.7
2,098,030 + IAI46_09925 0.18 -0.9
2,098,030 + IAI46_09925 0.18 +0.7
2,098,048 + IAI46_09925 0.18 -0.1
2,098,049 - IAI46_09925 0.19 -0.7
2,098,049 - IAI46_09925 0.19 -1.1
2,098,049 - IAI46_09925 0.19 +0.1
2,098,168 - IAI46_09925 0.22 +0.3

Or see this region's nucleotide sequence