Strain Fitness in Serratia liquefaciens MT49 around IAI46_09065

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09065 and IAI46_09070 are separated by 517 nucleotides IAI46_09065: IAI46_09065 - CDP-glycerol glycerophosphotransferase family protein, at 1,943,357 to 1,944,892 _09065 IAI46_09070: IAI46_09070 - endonuclease, at 1,945,410 to 1,946,234 _09070 Position (kb) 1943 1944 1945Strain fitness (log2 ratio) -2 -1 0 1 2at 1942.390 kb on - strandat 1942.418 kb on + strandat 1942.635 kb on - strandat 1942.683 kb on + strandat 1942.684 kb on - strandat 1942.685 kb on + strandat 1942.685 kb on + strandat 1942.685 kb on + strandat 1942.716 kb on + strandat 1942.731 kb on + strandat 1942.732 kb on - strandat 1942.739 kb on + strandat 1942.739 kb on + strandat 1942.740 kb on - strandat 1942.745 kb on + strandat 1942.745 kb on + strandat 1942.745 kb on + strandat 1942.746 kb on - strandat 1942.748 kb on + strandat 1942.748 kb on + strandat 1942.752 kb on + strandat 1942.753 kb on - strandat 1942.753 kb on - strandat 1942.785 kb on + strandat 1942.785 kb on + strandat 1942.854 kb on - strandat 1942.869 kb on + strandat 1942.885 kb on + strandat 1942.903 kb on + strandat 1942.904 kb on - strandat 1943.223 kb on - strandat 1943.541 kb on - strand, within IAI46_09065at 1943.627 kb on + strand, within IAI46_09065at 1943.771 kb on - strand, within IAI46_09065at 1943.897 kb on - strand, within IAI46_09065at 1943.897 kb on - strand, within IAI46_09065at 1944.153 kb on - strand, within IAI46_09065at 1944.162 kb on + strand, within IAI46_09065at 1944.286 kb on + strand, within IAI46_09065at 1944.445 kb on - strand, within IAI46_09065at 1944.445 kb on - strand, within IAI46_09065at 1944.473 kb on - strand, within IAI46_09065at 1944.874 kb on - strandat 1944.979 kb on + strandat 1945.071 kb on + strandat 1945.076 kb on + strandat 1945.190 kb on - strandat 1945.190 kb on - strandat 1945.190 kb on - strandat 1945.297 kb on + strandat 1945.300 kb on + strandat 1945.300 kb on + strandat 1945.300 kb on + strandat 1945.301 kb on - strandat 1945.324 kb on - strandat 1945.324 kb on - strandat 1945.400 kb on + strandat 1945.400 kb on + strandat 1945.477 kb on + strandat 1945.477 kb on + strandat 1945.552 kb on + strand, within IAI46_09070at 1945.553 kb on - strand, within IAI46_09070at 1945.725 kb on + strand, within IAI46_09070at 1945.726 kb on - strand, within IAI46_09070at 1945.777 kb on + strand, within IAI46_09070at 1945.855 kb on + strand, within IAI46_09070

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,942,390 - -0.1
1,942,418 + +0.6
1,942,635 - -0.1
1,942,683 + -0.6
1,942,684 - -0.1
1,942,685 + -0.4
1,942,685 + -0.3
1,942,685 + +1.3
1,942,716 + -0.5
1,942,731 + +0.7
1,942,732 - -0.5
1,942,739 + +0.9
1,942,739 + +1.2
1,942,740 - +0.1
1,942,745 + -0.5
1,942,745 + -0.4
1,942,745 + +1.3
1,942,746 - +0.0
1,942,748 + -0.6
1,942,748 + +0.3
1,942,752 + -0.1
1,942,753 - +0.5
1,942,753 - +0.4
1,942,785 + +0.9
1,942,785 + +0.6
1,942,854 - -0.5
1,942,869 + -0.6
1,942,885 + +1.1
1,942,903 + -0.1
1,942,904 - -0.1
1,943,223 - -1.0
1,943,541 - IAI46_09065 0.12 -0.7
1,943,627 + IAI46_09065 0.18 +0.3
1,943,771 - IAI46_09065 0.27 -1.4
1,943,897 - IAI46_09065 0.35 +0.3
1,943,897 - IAI46_09065 0.35 -1.3
1,944,153 - IAI46_09065 0.52 +1.9
1,944,162 + IAI46_09065 0.52 -0.7
1,944,286 + IAI46_09065 0.60 -0.4
1,944,445 - IAI46_09065 0.71 -0.3
1,944,445 - IAI46_09065 0.71 +0.0
1,944,473 - IAI46_09065 0.73 +0.2
1,944,874 - +1.0
1,944,979 + -1.1
1,945,071 + +0.3
1,945,076 + -0.3
1,945,190 - +0.7
1,945,190 - -0.4
1,945,190 - -2.4
1,945,297 + +0.0
1,945,300 + +1.1
1,945,300 + -1.4
1,945,300 + +1.9
1,945,301 - +0.3
1,945,324 - +2.1
1,945,324 - +0.4
1,945,400 + +0.3
1,945,400 + -0.1
1,945,477 + -0.3
1,945,477 + -0.5
1,945,552 + IAI46_09070 0.17 -1.1
1,945,553 - IAI46_09070 0.17 -1.5
1,945,725 + IAI46_09070 0.38 +0.4
1,945,726 - IAI46_09070 0.38 +0.0
1,945,777 + IAI46_09070 0.44 -2.0
1,945,855 + IAI46_09070 0.54 +0.3

Or see this region's nucleotide sequence