Strain Fitness in Serratia liquefaciens MT49 around IAI46_08765

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08760 and IAI46_08765 are separated by 226 nucleotidesIAI46_08765 and IAI46_08770 are separated by 255 nucleotides IAI46_08760: IAI46_08760 - asparagine--tRNA ligase, at 1,876,596 to 1,877,996 _08760 IAI46_08765: IAI46_08765 - nicotinate phosphoribosyltransferase, at 1,878,223 to 1,879,428 _08765 IAI46_08770: IAI46_08770 - GGDEF domain-containing protein, at 1,879,684 to 1,881,384 _08770 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -1 0 1 2at 1878.034 kb on - strandat 1878.061 kb on - strandat 1878.157 kb on - strandat 1878.159 kb on - strandat 1878.224 kb on + strandat 1878.248 kb on - strandat 1878.324 kb on + strandat 1878.408 kb on + strand, within IAI46_08765at 1878.408 kb on + strand, within IAI46_08765at 1878.408 kb on + strand, within IAI46_08765at 1878.409 kb on - strand, within IAI46_08765at 1878.597 kb on - strand, within IAI46_08765at 1878.597 kb on - strand, within IAI46_08765at 1878.778 kb on - strand, within IAI46_08765at 1878.815 kb on + strand, within IAI46_08765at 1878.816 kb on - strand, within IAI46_08765at 1878.816 kb on - strand, within IAI46_08765at 1879.151 kb on + strand, within IAI46_08765at 1879.280 kb on + strand, within IAI46_08765at 1879.332 kb on + strandat 1879.341 kb on - strandat 1879.365 kb on + strandat 1879.375 kb on - strandat 1879.375 kb on - strandat 1879.375 kb on - strandat 1879.376 kb on + strandat 1879.376 kb on + strandat 1879.376 kb on + strandat 1879.376 kb on + strandat 1879.377 kb on - strandat 1879.377 kb on - strandat 1879.419 kb on - strandat 1879.419 kb on - strandat 1879.428 kb on + strandat 1879.428 kb on + strandat 1879.612 kb on + strandat 1879.613 kb on - strandat 1879.621 kb on - strandat 1879.621 kb on - strandat 1879.745 kb on + strandat 1879.873 kb on - strand, within IAI46_08770at 1879.955 kb on + strand, within IAI46_08770at 1880.029 kb on + strand, within IAI46_08770at 1880.042 kb on + strand, within IAI46_08770at 1880.042 kb on + strand, within IAI46_08770at 1880.043 kb on - strand, within IAI46_08770at 1880.150 kb on + strand, within IAI46_08770at 1880.151 kb on - strand, within IAI46_08770at 1880.154 kb on + strand, within IAI46_08770at 1880.154 kb on + strand, within IAI46_08770at 1880.155 kb on - strand, within IAI46_08770at 1880.155 kb on - strand, within IAI46_08770at 1880.174 kb on + strand, within IAI46_08770at 1880.175 kb on - strand, within IAI46_08770at 1880.196 kb on + strand, within IAI46_08770at 1880.244 kb on - strand, within IAI46_08770at 1880.250 kb on + strand, within IAI46_08770at 1880.250 kb on + strand, within IAI46_08770at 1880.251 kb on - strand, within IAI46_08770at 1880.317 kb on - strand, within IAI46_08770at 1880.350 kb on - strand, within IAI46_08770at 1880.391 kb on - strand, within IAI46_08770at 1880.391 kb on - strand, within IAI46_08770

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,878,034 - +1.1
1,878,061 - +0.1
1,878,157 - +0.8
1,878,159 - -0.4
1,878,224 + +0.1
1,878,248 - +0.1
1,878,324 + +0.7
1,878,408 + IAI46_08765 0.15 -0.1
1,878,408 + IAI46_08765 0.15 -0.4
1,878,408 + IAI46_08765 0.15 +0.6
1,878,409 - IAI46_08765 0.15 +0.4
1,878,597 - IAI46_08765 0.31 +0.2
1,878,597 - IAI46_08765 0.31 +0.1
1,878,778 - IAI46_08765 0.46 -0.5
1,878,815 + IAI46_08765 0.49 -0.1
1,878,816 - IAI46_08765 0.49 -0.2
1,878,816 - IAI46_08765 0.49 +0.8
1,879,151 + IAI46_08765 0.77 +0.0
1,879,280 + IAI46_08765 0.88 +0.2
1,879,332 + -0.1
1,879,341 - -1.6
1,879,365 + +0.7
1,879,375 - +1.3
1,879,375 - -0.4
1,879,375 - +1.4
1,879,376 + +0.1
1,879,376 + -0.7
1,879,376 + -0.6
1,879,376 + +1.6
1,879,377 - +1.1
1,879,377 - -0.4
1,879,419 - +0.3
1,879,419 - +0.4
1,879,428 + -1.4
1,879,428 + -0.6
1,879,612 + +0.7
1,879,613 - +0.6
1,879,621 - +0.4
1,879,621 - +2.5
1,879,745 + +0.5
1,879,873 - IAI46_08770 0.11 -0.1
1,879,955 + IAI46_08770 0.16 +0.9
1,880,029 + IAI46_08770 0.20 -0.4
1,880,042 + IAI46_08770 0.21 -0.5
1,880,042 + IAI46_08770 0.21 -0.4
1,880,043 - IAI46_08770 0.21 +0.5
1,880,150 + IAI46_08770 0.27 -0.9
1,880,151 - IAI46_08770 0.27 +0.5
1,880,154 + IAI46_08770 0.28 +0.3
1,880,154 + IAI46_08770 0.28 +0.2
1,880,155 - IAI46_08770 0.28 +0.7
1,880,155 - IAI46_08770 0.28 +0.3
1,880,174 + IAI46_08770 0.29 +0.3
1,880,175 - IAI46_08770 0.29 -0.8
1,880,196 + IAI46_08770 0.30 +0.4
1,880,244 - IAI46_08770 0.33 -1.2
1,880,250 + IAI46_08770 0.33 -0.0
1,880,250 + IAI46_08770 0.33 +1.1
1,880,251 - IAI46_08770 0.33 -0.1
1,880,317 - IAI46_08770 0.37 +0.3
1,880,350 - IAI46_08770 0.39 -0.4
1,880,391 - IAI46_08770 0.42 +0.7
1,880,391 - IAI46_08770 0.42 +1.1

Or see this region's nucleotide sequence