Strain Fitness in Serratia liquefaciens MT49 around IAI46_08175

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08170 and IAI46_08175 are separated by 264 nucleotidesIAI46_08175 and IAI46_08180 are separated by 311 nucleotidesIAI46_08180 and IAI46_08185 overlap by 7 nucleotides IAI46_08170: IAI46_08170 - HAD hydrolase-like protein, at 1,739,361 to 1,741,406 _08170 IAI46_08175: IAI46_08175 - transposase domain-containing protein, at 1,741,671 to 1,742,698 _08175 IAI46_08180: IAI46_08180 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,743,010 to 1,743,630 _08180 IAI46_08185: IAI46_08185 - imidazole glycerol phosphate synthase subunit HisF, at 1,743,624 to 1,744,400 _08185 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -3 -2 -1 0 1at 1740.698 kb on + strand, within IAI46_08170at 1740.698 kb on + strand, within IAI46_08170at 1740.765 kb on + strand, within IAI46_08170at 1740.815 kb on + strand, within IAI46_08170at 1740.930 kb on + strand, within IAI46_08170at 1740.952 kb on + strand, within IAI46_08170at 1740.952 kb on + strand, within IAI46_08170at 1741.362 kb on + strandat 1741.409 kb on + strandat 1741.464 kb on + strandat 1741.510 kb on - strandat 1741.532 kb on - strandat 1741.600 kb on + strandat 1741.662 kb on + strandat 1741.837 kb on - strand, within IAI46_08175at 1741.837 kb on - strand, within IAI46_08175at 1741.910 kb on - strand, within IAI46_08175at 1741.939 kb on - strand, within IAI46_08175at 1742.069 kb on + strand, within IAI46_08175at 1742.069 kb on + strand, within IAI46_08175at 1742.071 kb on + strand, within IAI46_08175at 1742.071 kb on + strand, within IAI46_08175at 1742.071 kb on + strand, within IAI46_08175at 1742.071 kb on + strand, within IAI46_08175at 1742.072 kb on - strand, within IAI46_08175at 1742.072 kb on - strand, within IAI46_08175at 1742.072 kb on - strand, within IAI46_08175at 1742.072 kb on - strand, within IAI46_08175at 1742.072 kb on - strand, within IAI46_08175at 1742.072 kb on - strand, within IAI46_08175at 1742.076 kb on - strand, within IAI46_08175at 1742.237 kb on + strand, within IAI46_08175at 1742.238 kb on - strand, within IAI46_08175at 1742.238 kb on - strand, within IAI46_08175at 1742.277 kb on + strand, within IAI46_08175at 1742.351 kb on - strand, within IAI46_08175at 1742.351 kb on - strand, within IAI46_08175at 1742.408 kb on + strand, within IAI46_08175at 1742.409 kb on - strand, within IAI46_08175at 1742.462 kb on + strand, within IAI46_08175at 1742.463 kb on - strand, within IAI46_08175at 1742.693 kb on - strandat 1742.717 kb on + strandat 1742.751 kb on + strandat 1742.752 kb on - strandat 1742.755 kb on - strandat 1742.764 kb on - strandat 1742.778 kb on - strandat 1742.901 kb on + strandat 1742.902 kb on - strandat 1742.902 kb on - strandat 1742.910 kb on - strandat 1742.979 kb on - strandat 1742.979 kb on - strandat 1742.979 kb on - strandat 1743.002 kb on + strandat 1743.003 kb on - strandat 1743.011 kb on + strandat 1743.012 kb on - strandat 1743.195 kb on + strand, within IAI46_08180at 1743.230 kb on + strand, within IAI46_08180at 1743.327 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.409 kb on + strand, within IAI46_08180at 1743.410 kb on - strand, within IAI46_08180at 1743.463 kb on - strand, within IAI46_08180at 1743.463 kb on - strand, within IAI46_08180at 1743.525 kb on - strand, within IAI46_08180

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,740,698 + IAI46_08170 0.65 -0.1
1,740,698 + IAI46_08170 0.65 +0.0
1,740,765 + IAI46_08170 0.69 -0.2
1,740,815 + IAI46_08170 0.71 +0.6
1,740,930 + IAI46_08170 0.77 -0.0
1,740,952 + IAI46_08170 0.78 +0.3
1,740,952 + IAI46_08170 0.78 -0.2
1,741,362 + +0.2
1,741,409 + +1.1
1,741,464 + +0.4
1,741,510 - +0.6
1,741,532 - +0.9
1,741,600 + -0.3
1,741,662 + +0.5
1,741,837 - IAI46_08175 0.16 +0.5
1,741,837 - IAI46_08175 0.16 +0.4
1,741,910 - IAI46_08175 0.23 +0.2
1,741,939 - IAI46_08175 0.26 +0.4
1,742,069 + IAI46_08175 0.39 +0.1
1,742,069 + IAI46_08175 0.39 +0.9
1,742,071 + IAI46_08175 0.39 -0.9
1,742,071 + IAI46_08175 0.39 +0.3
1,742,071 + IAI46_08175 0.39 +0.8
1,742,071 + IAI46_08175 0.39 +0.7
1,742,072 - IAI46_08175 0.39 -0.7
1,742,072 - IAI46_08175 0.39 +0.7
1,742,072 - IAI46_08175 0.39 +1.1
1,742,072 - IAI46_08175 0.39 +1.7
1,742,072 - IAI46_08175 0.39 +0.3
1,742,072 - IAI46_08175 0.39 +0.8
1,742,076 - IAI46_08175 0.39 -2.8
1,742,237 + IAI46_08175 0.55 -0.4
1,742,238 - IAI46_08175 0.55 +0.0
1,742,238 - IAI46_08175 0.55 +0.8
1,742,277 + IAI46_08175 0.59 +0.5
1,742,351 - IAI46_08175 0.66 +0.3
1,742,351 - IAI46_08175 0.66 -0.3
1,742,408 + IAI46_08175 0.72 -0.8
1,742,409 - IAI46_08175 0.72 +0.5
1,742,462 + IAI46_08175 0.77 -0.2
1,742,463 - IAI46_08175 0.77 +0.3
1,742,693 - -1.7
1,742,717 + +0.6
1,742,751 + +0.6
1,742,752 - +0.2
1,742,755 - +0.3
1,742,764 - -0.8
1,742,778 - +0.3
1,742,901 + +0.9
1,742,902 - +0.1
1,742,902 - -1.1
1,742,910 - -1.5
1,742,979 - +0.8
1,742,979 - -0.2
1,742,979 - -0.2
1,743,002 + +0.0
1,743,003 - +1.3
1,743,011 + -1.1
1,743,012 - +1.3
1,743,195 + IAI46_08180 0.30 +0.9
1,743,230 + IAI46_08180 0.35 +0.1
1,743,327 + IAI46_08180 0.51 -0.6
1,743,409 + IAI46_08180 0.64 +0.3
1,743,409 + IAI46_08180 0.64 -0.7
1,743,409 + IAI46_08180 0.64 +0.1
1,743,409 + IAI46_08180 0.64 -0.2
1,743,410 - IAI46_08180 0.64 -0.1
1,743,463 - IAI46_08180 0.73 -0.2
1,743,463 - IAI46_08180 0.73 +0.1
1,743,525 - IAI46_08180 0.83 -0.2

Or see this region's nucleotide sequence