Strain Fitness in Serratia liquefaciens MT49 around IAI46_07780

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07775 and IAI46_07780 are separated by 267 nucleotidesIAI46_07780 and IAI46_07785 are separated by 63 nucleotidesIAI46_07785 and IAI46_07790 are separated by 97 nucleotides IAI46_07775: IAI46_07775 - alkaline phosphatase, at 1,644,225 to 1,645,652 _07775 IAI46_07780: IAI46_07780 - glutathione S-transferase N-terminal domain-containing protein, at 1,645,920 to 1,646,627 _07780 IAI46_07785: IAI46_07785 - winged helix-turn-helix transcriptional regulator, at 1,646,691 to 1,647,374 _07785 IAI46_07790: IAI46_07790 - antibiotic biosynthesis monooxygenase, at 1,647,472 to 1,647,819 _07790 Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -2 -1 0 1 2at 1644.941 kb on + strand, within IAI46_07775at 1645.180 kb on - strand, within IAI46_07775at 1645.180 kb on - strand, within IAI46_07775at 1645.228 kb on + strand, within IAI46_07775at 1645.315 kb on + strand, within IAI46_07775at 1645.324 kb on + strand, within IAI46_07775at 1645.385 kb on - strand, within IAI46_07775at 1645.385 kb on - strand, within IAI46_07775at 1645.602 kb on + strandat 1645.602 kb on + strandat 1645.602 kb on + strandat 1645.603 kb on - strandat 1645.603 kb on - strandat 1645.605 kb on + strandat 1645.605 kb on + strandat 1645.606 kb on - strandat 1645.606 kb on - strandat 1645.673 kb on - strandat 1645.677 kb on + strandat 1645.678 kb on - strandat 1645.685 kb on + strandat 1645.710 kb on - strandat 1645.744 kb on + strandat 1645.749 kb on - strandat 1645.813 kb on + strandat 1645.814 kb on - strandat 1645.814 kb on - strandat 1645.815 kb on + strandat 1645.829 kb on + strandat 1645.842 kb on + strandat 1645.922 kb on - strandat 1646.055 kb on - strand, within IAI46_07780at 1646.093 kb on - strand, within IAI46_07780at 1646.140 kb on - strand, within IAI46_07780at 1646.168 kb on + strand, within IAI46_07780at 1646.168 kb on + strand, within IAI46_07780at 1646.168 kb on + strand, within IAI46_07780at 1646.169 kb on - strand, within IAI46_07780at 1646.170 kb on + strand, within IAI46_07780at 1646.171 kb on - strand, within IAI46_07780at 1646.171 kb on - strand, within IAI46_07780at 1646.189 kb on + strand, within IAI46_07780at 1646.198 kb on - strand, within IAI46_07780at 1646.272 kb on - strand, within IAI46_07780at 1646.290 kb on + strand, within IAI46_07780at 1646.341 kb on + strand, within IAI46_07780at 1646.342 kb on - strand, within IAI46_07780at 1646.342 kb on - strand, within IAI46_07780at 1646.373 kb on + strand, within IAI46_07780at 1646.495 kb on - strand, within IAI46_07780at 1646.522 kb on + strand, within IAI46_07780at 1646.662 kb on + strandat 1646.662 kb on + strandat 1646.662 kb on + strandat 1646.663 kb on - strandat 1646.663 kb on - strandat 1646.775 kb on + strand, within IAI46_07785at 1646.817 kb on + strand, within IAI46_07785at 1646.817 kb on + strand, within IAI46_07785at 1646.818 kb on - strand, within IAI46_07785at 1646.818 kb on - strand, within IAI46_07785at 1646.968 kb on - strand, within IAI46_07785at 1646.976 kb on + strand, within IAI46_07785at 1647.038 kb on + strand, within IAI46_07785at 1647.271 kb on + strand, within IAI46_07785at 1647.368 kb on + strandat 1647.374 kb on + strandat 1647.385 kb on + strandat 1647.394 kb on + strandat 1647.394 kb on + strandat 1647.394 kb on + strandat 1647.394 kb on + strandat 1647.395 kb on - strandat 1647.452 kb on - strandat 1647.524 kb on - strand, within IAI46_07790

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,644,941 + IAI46_07775 0.50 -0.5
1,645,180 - IAI46_07775 0.67 +1.3
1,645,180 - IAI46_07775 0.67 -0.0
1,645,228 + IAI46_07775 0.70 -1.8
1,645,315 + IAI46_07775 0.76 -1.5
1,645,324 + IAI46_07775 0.77 +2.1
1,645,385 - IAI46_07775 0.81 +0.6
1,645,385 - IAI46_07775 0.81 +0.2
1,645,602 + +0.5
1,645,602 + -0.7
1,645,602 + -0.4
1,645,603 - +1.1
1,645,603 - +0.3
1,645,605 + +0.1
1,645,605 + -0.3
1,645,606 - +1.2
1,645,606 - +0.1
1,645,673 - -0.2
1,645,677 + +1.6
1,645,678 - -0.6
1,645,685 + +1.0
1,645,710 - +0.2
1,645,744 + +0.7
1,645,749 - -0.2
1,645,813 + -0.0
1,645,814 - -0.2
1,645,814 - -1.3
1,645,815 + +0.1
1,645,829 + +0.1
1,645,842 + +0.8
1,645,922 - -1.0
1,646,055 - IAI46_07780 0.19 +1.0
1,646,093 - IAI46_07780 0.24 +0.9
1,646,140 - IAI46_07780 0.31 +0.6
1,646,168 + IAI46_07780 0.35 +0.9
1,646,168 + IAI46_07780 0.35 -0.4
1,646,168 + IAI46_07780 0.35 +0.2
1,646,169 - IAI46_07780 0.35 +0.6
1,646,170 + IAI46_07780 0.35 +1.9
1,646,171 - IAI46_07780 0.35 -0.7
1,646,171 - IAI46_07780 0.35 -0.0
1,646,189 + IAI46_07780 0.38 -0.3
1,646,198 - IAI46_07780 0.39 +0.3
1,646,272 - IAI46_07780 0.50 +0.1
1,646,290 + IAI46_07780 0.52 -0.4
1,646,341 + IAI46_07780 0.59 +0.1
1,646,342 - IAI46_07780 0.60 -0.3
1,646,342 - IAI46_07780 0.60 +0.7
1,646,373 + IAI46_07780 0.64 -0.2
1,646,495 - IAI46_07780 0.81 -1.4
1,646,522 + IAI46_07780 0.85 +0.1
1,646,662 + -1.2
1,646,662 + -0.4
1,646,662 + +0.4
1,646,663 - +0.6
1,646,663 - -0.1
1,646,775 + IAI46_07785 0.12 +0.3
1,646,817 + IAI46_07785 0.18 -1.9
1,646,817 + IAI46_07785 0.18 +0.5
1,646,818 - IAI46_07785 0.19 +1.0
1,646,818 - IAI46_07785 0.19 -0.5
1,646,968 - IAI46_07785 0.40 +0.9
1,646,976 + IAI46_07785 0.42 +0.2
1,647,038 + IAI46_07785 0.51 -0.4
1,647,271 + IAI46_07785 0.85 +0.1
1,647,368 + +0.6
1,647,374 + -0.1
1,647,385 + -0.5
1,647,394 + +0.7
1,647,394 + +0.6
1,647,394 + -0.4
1,647,394 + +0.1
1,647,395 - -1.5
1,647,452 - -0.8
1,647,524 - IAI46_07790 0.15 -0.8

Or see this region's nucleotide sequence