Strain Fitness in Serratia liquefaciens MT49 around IAI46_07490

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07480 and IAI46_07485 are separated by 60 nucleotidesIAI46_07485 and IAI46_07490 are separated by 40 nucleotidesIAI46_07490 and IAI46_07495 are separated by 49 nucleotides IAI46_07480: IAI46_07480 - MFS transporter, at 1,580,605 to 1,582,029 _07480 IAI46_07485: IAI46_07485 - FMN-binding negative transcriptional regulator, at 1,582,090 to 1,582,722 _07485 IAI46_07490: IAI46_07490 - DNA-binding protein YbiB, at 1,582,763 to 1,583,722 _07490 IAI46_07495: IAI46_07495 - peptidase M3, at 1,583,772 to 1,585,628 _07495 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -2 -1 0 1 2at 1581.949 kb on + strandat 1581.950 kb on - strandat 1582.028 kb on - strandat 1582.045 kb on + strandat 1582.046 kb on - strandat 1582.046 kb on - strandat 1582.051 kb on + strandat 1582.067 kb on + strandat 1582.088 kb on + strandat 1582.088 kb on + strandat 1582.088 kb on + strandat 1582.088 kb on + strandat 1582.088 kb on + strandat 1582.089 kb on - strandat 1582.089 kb on - strandat 1582.089 kb on - strandat 1582.089 kb on - strandat 1582.089 kb on - strandat 1582.093 kb on + strandat 1582.093 kb on + strandat 1582.093 kb on + strandat 1582.339 kb on + strand, within IAI46_07485at 1582.339 kb on + strand, within IAI46_07485at 1582.340 kb on - strand, within IAI46_07485at 1582.341 kb on + strand, within IAI46_07485at 1582.341 kb on + strand, within IAI46_07485at 1582.341 kb on + strand, within IAI46_07485at 1582.342 kb on - strand, within IAI46_07485at 1582.342 kb on - strand, within IAI46_07485at 1582.358 kb on - strand, within IAI46_07485at 1582.403 kb on - strand, within IAI46_07485at 1582.412 kb on + strand, within IAI46_07485at 1582.412 kb on + strand, within IAI46_07485at 1582.412 kb on + strand, within IAI46_07485at 1582.541 kb on - strand, within IAI46_07485at 1582.541 kb on - strand, within IAI46_07485at 1582.542 kb on + strand, within IAI46_07485at 1582.542 kb on + strand, within IAI46_07485at 1582.542 kb on + strand, within IAI46_07485at 1582.543 kb on - strand, within IAI46_07485at 1582.543 kb on - strand, within IAI46_07485at 1582.726 kb on - strandat 1582.726 kb on - strandat 1582.726 kb on - strandat 1582.769 kb on + strandat 1582.916 kb on - strand, within IAI46_07490at 1583.014 kb on - strand, within IAI46_07490at 1583.014 kb on - strand, within IAI46_07490at 1583.024 kb on + strand, within IAI46_07490at 1583.024 kb on + strand, within IAI46_07490at 1583.024 kb on + strand, within IAI46_07490at 1583.025 kb on - strand, within IAI46_07490at 1583.025 kb on - strand, within IAI46_07490at 1583.097 kb on + strand, within IAI46_07490at 1583.296 kb on + strand, within IAI46_07490at 1583.296 kb on + strand, within IAI46_07490at 1583.296 kb on + strand, within IAI46_07490at 1583.308 kb on + strand, within IAI46_07490at 1583.492 kb on + strand, within IAI46_07490at 1583.492 kb on + strand, within IAI46_07490at 1583.492 kb on + strand, within IAI46_07490at 1583.493 kb on - strand, within IAI46_07490at 1583.733 kb on + strandat 1583.744 kb on - strandat 1583.862 kb on - strandat 1583.917 kb on - strandat 1583.918 kb on + strandat 1583.919 kb on - strandat 1584.121 kb on - strand, within IAI46_07495at 1584.123 kb on - strand, within IAI46_07495at 1584.232 kb on - strand, within IAI46_07495at 1584.380 kb on + strand, within IAI46_07495at 1584.549 kb on + strand, within IAI46_07495at 1584.549 kb on + strand, within IAI46_07495at 1584.549 kb on + strand, within IAI46_07495at 1584.549 kb on + strand, within IAI46_07495at 1584.550 kb on - strand, within IAI46_07495at 1584.594 kb on - strand, within IAI46_07495at 1584.660 kb on + strand, within IAI46_07495at 1584.675 kb on - strand, within IAI46_07495at 1584.699 kb on - strand, within IAI46_07495

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,581,949 + -0.2
1,581,950 - -0.4
1,582,028 - +0.6
1,582,045 + +1.7
1,582,046 - -0.1
1,582,046 - -1.8
1,582,051 + +0.3
1,582,067 + +0.3
1,582,088 + -0.4
1,582,088 + -0.2
1,582,088 + +0.1
1,582,088 + +0.2
1,582,088 + -0.8
1,582,089 - +1.7
1,582,089 - +0.3
1,582,089 - +0.2
1,582,089 - +0.1
1,582,089 - -0.1
1,582,093 + -0.2
1,582,093 + -0.0
1,582,093 + +0.7
1,582,339 + IAI46_07485 0.39 -1.0
1,582,339 + IAI46_07485 0.39 -0.5
1,582,340 - IAI46_07485 0.39 -0.4
1,582,341 + IAI46_07485 0.40 +0.7
1,582,341 + IAI46_07485 0.40 -0.3
1,582,341 + IAI46_07485 0.40 +0.1
1,582,342 - IAI46_07485 0.40 +0.5
1,582,342 - IAI46_07485 0.40 -1.1
1,582,358 - IAI46_07485 0.42 +0.1
1,582,403 - IAI46_07485 0.49 +0.8
1,582,412 + IAI46_07485 0.51 +0.4
1,582,412 + IAI46_07485 0.51 +1.4
1,582,412 + IAI46_07485 0.51 +0.2
1,582,541 - IAI46_07485 0.71 -0.5
1,582,541 - IAI46_07485 0.71 -0.1
1,582,542 + IAI46_07485 0.71 +1.3
1,582,542 + IAI46_07485 0.71 +0.3
1,582,542 + IAI46_07485 0.71 -0.7
1,582,543 - IAI46_07485 0.72 +0.3
1,582,543 - IAI46_07485 0.72 -0.4
1,582,726 - +0.5
1,582,726 - +0.3
1,582,726 - -0.0
1,582,769 + -0.6
1,582,916 - IAI46_07490 0.16 -0.4
1,583,014 - IAI46_07490 0.26 -0.3
1,583,014 - IAI46_07490 0.26 +0.0
1,583,024 + IAI46_07490 0.27 +0.1
1,583,024 + IAI46_07490 0.27 +0.7
1,583,024 + IAI46_07490 0.27 -0.0
1,583,025 - IAI46_07490 0.27 +0.1
1,583,025 - IAI46_07490 0.27 +0.1
1,583,097 + IAI46_07490 0.35 -0.1
1,583,296 + IAI46_07490 0.56 +0.1
1,583,296 + IAI46_07490 0.56 +0.0
1,583,296 + IAI46_07490 0.56 +0.6
1,583,308 + IAI46_07490 0.57 +1.2
1,583,492 + IAI46_07490 0.76 -0.6
1,583,492 + IAI46_07490 0.76 +0.0
1,583,492 + IAI46_07490 0.76 +0.1
1,583,493 - IAI46_07490 0.76 -0.3
1,583,733 + -0.2
1,583,744 - +0.1
1,583,862 - -0.2
1,583,917 - -0.0
1,583,918 + +0.1
1,583,919 - -0.4
1,584,121 - IAI46_07495 0.19 +0.6
1,584,123 - IAI46_07495 0.19 +1.9
1,584,232 - IAI46_07495 0.25 +0.2
1,584,380 + IAI46_07495 0.33 -0.0
1,584,549 + IAI46_07495 0.42 +0.3
1,584,549 + IAI46_07495 0.42 +1.6
1,584,549 + IAI46_07495 0.42 -0.3
1,584,549 + IAI46_07495 0.42 -0.9
1,584,550 - IAI46_07495 0.42 +1.2
1,584,594 - IAI46_07495 0.44 +1.6
1,584,660 + IAI46_07495 0.48 -0.4
1,584,675 - IAI46_07495 0.49 +1.0
1,584,699 - IAI46_07495 0.50 -0.5

Or see this region's nucleotide sequence