Strain Fitness in Serratia liquefaciens MT49 around IAI46_06270

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06265 and IAI46_06270 are separated by 16 nucleotidesIAI46_06270 and IAI46_06275 are separated by 261 nucleotides IAI46_06265: IAI46_06265 - succinate dehydrogenase flavoprotein subunit, at 1,339,586 to 1,341,352 _06265 IAI46_06270: IAI46_06270 - succinate dehydrogenase iron-sulfur subunit, at 1,341,369 to 1,342,085 _06270 IAI46_06275: IAI46_06275 - 2-oxoglutarate dehydrogenase E1 component, at 1,342,347 to 1,345,160 _06275 Position (kb) 1341 1342 1343Strain fitness (log2 ratio) -1 0 1at 1340.461 kb on + strand, within IAI46_06265at 1340.462 kb on - strand, within IAI46_06265at 1340.648 kb on + strand, within IAI46_06265at 1340.649 kb on - strand, within IAI46_06265at 1340.895 kb on + strand, within IAI46_06265at 1340.895 kb on + strand, within IAI46_06265at 1341.347 kb on + strandat 1341.350 kb on + strandat 1341.350 kb on + strandat 1341.351 kb on - strandat 1341.436 kb on - strandat 1341.509 kb on + strand, within IAI46_06270at 1341.509 kb on + strand, within IAI46_06270at 1341.509 kb on + strand, within IAI46_06270at 1341.726 kb on + strand, within IAI46_06270at 1341.726 kb on + strand, within IAI46_06270at 1341.808 kb on - strand, within IAI46_06270at 1341.958 kb on + strand, within IAI46_06270at 1341.995 kb on + strand, within IAI46_06270at 1342.012 kb on + strand, within IAI46_06270at 1342.012 kb on + strand, within IAI46_06270at 1342.013 kb on - strand, within IAI46_06270at 1342.019 kb on + strandat 1342.019 kb on + strandat 1342.020 kb on - strandat 1342.171 kb on - strandat 1342.211 kb on + strandat 1342.295 kb on + strandat 1342.295 kb on + strandat 1342.621 kb on + strandat 1342.860 kb on + strand, within IAI46_06275

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,340,461 + IAI46_06265 0.50 +0.1
1,340,462 - IAI46_06265 0.50 +0.5
1,340,648 + IAI46_06265 0.60 +0.7
1,340,649 - IAI46_06265 0.60 +0.5
1,340,895 + IAI46_06265 0.74 -0.7
1,340,895 + IAI46_06265 0.74 -0.1
1,341,347 + -1.1
1,341,350 + +1.4
1,341,350 + -0.1
1,341,351 - -0.6
1,341,436 - +0.2
1,341,509 + IAI46_06270 0.20 -0.6
1,341,509 + IAI46_06270 0.20 +0.4
1,341,509 + IAI46_06270 0.20 -0.9
1,341,726 + IAI46_06270 0.50 +0.2
1,341,726 + IAI46_06270 0.50 +0.2
1,341,808 - IAI46_06270 0.61 +0.9
1,341,958 + IAI46_06270 0.82 -1.7
1,341,995 + IAI46_06270 0.87 +0.1
1,342,012 + IAI46_06270 0.90 -0.8
1,342,012 + IAI46_06270 0.90 -0.7
1,342,013 - IAI46_06270 0.90 +0.7
1,342,019 + -0.8
1,342,019 + +0.2
1,342,020 - +0.4
1,342,171 - -0.7
1,342,211 + +0.3
1,342,295 + +0.3
1,342,295 + -0.3
1,342,621 + -0.7
1,342,860 + IAI46_06275 0.18 -0.3

Or see this region's nucleotide sequence