Strain Fitness in Serratia liquefaciens MT49 around IAI46_04530

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04525 and IAI46_04530 are separated by 250 nucleotidesIAI46_04530 and IAI46_04535 are separated by 111 nucleotidesIAI46_04535 and IAI46_04540 are separated by 9 nucleotides IAI46_04525: IAI46_04525 - lipid IV(A) palmitoyltransferase PagP, at 977,161 to 977,754 _04525 IAI46_04530: IAI46_04530 - DUF2501 domain-containing protein, at 978,005 to 978,490 _04530 IAI46_04535: IAI46_04535 - DUF333 domain-containing protein, at 978,602 to 978,865 _04535 IAI46_04540: IAI46_04540 - hypothetical protein, at 978,875 to 979,492 _04540 Position (kb) 978 979Strain fitness (log2 ratio) -1 0 1at 977.072 kb on - strandat 977.072 kb on - strandat 977.093 kb on + strandat 977.094 kb on - strandat 977.098 kb on + strandat 977.098 kb on + strandat 977.099 kb on - strandat 977.150 kb on - strandat 977.207 kb on + strandat 977.207 kb on + strandat 977.227 kb on + strand, within IAI46_04525at 977.227 kb on + strand, within IAI46_04525at 977.227 kb on + strand, within IAI46_04525at 977.344 kb on + strand, within IAI46_04525at 977.344 kb on + strand, within IAI46_04525at 977.368 kb on - strand, within IAI46_04525at 977.380 kb on + strand, within IAI46_04525at 977.394 kb on + strand, within IAI46_04525at 977.395 kb on - strand, within IAI46_04525at 977.400 kb on + strand, within IAI46_04525at 977.401 kb on - strand, within IAI46_04525at 977.401 kb on - strand, within IAI46_04525at 977.401 kb on - strand, within IAI46_04525at 977.437 kb on - strand, within IAI46_04525at 977.446 kb on + strand, within IAI46_04525at 977.447 kb on - strand, within IAI46_04525at 977.473 kb on - strand, within IAI46_04525at 977.473 kb on - strand, within IAI46_04525at 977.476 kb on + strand, within IAI46_04525at 977.476 kb on + strand, within IAI46_04525at 977.477 kb on - strand, within IAI46_04525at 977.477 kb on - strand, within IAI46_04525at 977.477 kb on - strand, within IAI46_04525at 977.477 kb on - strand, within IAI46_04525at 977.505 kb on + strand, within IAI46_04525at 977.505 kb on + strand, within IAI46_04525at 977.505 kb on + strand, within IAI46_04525at 977.506 kb on - strand, within IAI46_04525at 977.533 kb on + strand, within IAI46_04525at 977.624 kb on - strand, within IAI46_04525at 977.658 kb on + strand, within IAI46_04525at 977.665 kb on + strand, within IAI46_04525at 977.665 kb on + strand, within IAI46_04525at 977.667 kb on + strand, within IAI46_04525at 977.668 kb on - strand, within IAI46_04525at 977.668 kb on - strand, within IAI46_04525at 977.668 kb on - strand, within IAI46_04525at 977.692 kb on + strand, within IAI46_04525at 977.692 kb on + strand, within IAI46_04525at 977.692 kb on + strand, within IAI46_04525at 977.692 kb on + strand, within IAI46_04525at 977.693 kb on - strand, within IAI46_04525at 977.695 kb on - strandat 977.707 kb on + strandat 977.707 kb on + strandat 977.707 kb on + strandat 977.707 kb on + strandat 977.707 kb on + strandat 977.707 kb on + strandat 977.707 kb on + strandat 977.708 kb on - strandat 977.708 kb on - strandat 977.708 kb on - strandat 977.708 kb on - strandat 977.709 kb on + strandat 977.709 kb on + strandat 977.709 kb on + strandat 977.710 kb on - strandat 977.710 kb on - strandat 977.710 kb on - strandat 977.787 kb on - strandat 978.172 kb on - strand, within IAI46_04530at 978.237 kb on - strand, within IAI46_04530at 978.250 kb on + strand, within IAI46_04530at 978.592 kb on + strandat 978.593 kb on - strandat 978.648 kb on + strand, within IAI46_04535at 978.648 kb on + strand, within IAI46_04535at 978.670 kb on + strand, within IAI46_04535at 978.696 kb on + strand, within IAI46_04535at 978.731 kb on + strand, within IAI46_04535at 978.731 kb on + strand, within IAI46_04535at 978.732 kb on - strand, within IAI46_04535at 978.732 kb on - strand, within IAI46_04535at 978.785 kb on + strand, within IAI46_04535at 978.796 kb on + strand, within IAI46_04535at 978.796 kb on + strand, within IAI46_04535at 978.797 kb on - strand, within IAI46_04535at 978.903 kb on + strandat 978.903 kb on + strandat 978.989 kb on - strand, within IAI46_04540at 979.023 kb on + strand, within IAI46_04540at 979.023 kb on + strand, within IAI46_04540at 979.024 kb on - strand, within IAI46_04540at 979.024 kb on - strand, within IAI46_04540at 979.051 kb on + strand, within IAI46_04540at 979.051 kb on + strand, within IAI46_04540at 979.308 kb on + strand, within IAI46_04540at 979.362 kb on + strand, within IAI46_04540at 979.399 kb on + strand, within IAI46_04540at 979.400 kb on - strand, within IAI46_04540at 979.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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977,072 - +0.3
977,072 - -0.1
977,093 + +0.6
977,094 - -0.3
977,098 + -0.0
977,098 + +0.7
977,099 - +0.8
977,150 - +0.0
977,207 + +1.5
977,207 + -0.2
977,227 + IAI46_04525 0.11 +0.0
977,227 + IAI46_04525 0.11 -0.5
977,227 + IAI46_04525 0.11 +0.7
977,344 + IAI46_04525 0.31 -0.8
977,344 + IAI46_04525 0.31 +0.1
977,368 - IAI46_04525 0.35 +0.5
977,380 + IAI46_04525 0.37 +0.5
977,394 + IAI46_04525 0.39 +0.1
977,395 - IAI46_04525 0.39 +0.3
977,400 + IAI46_04525 0.40 +0.2
977,401 - IAI46_04525 0.40 +0.1
977,401 - IAI46_04525 0.40 +0.0
977,401 - IAI46_04525 0.40 -0.2
977,437 - IAI46_04525 0.46 +0.4
977,446 + IAI46_04525 0.48 +0.0
977,447 - IAI46_04525 0.48 +0.9
977,473 - IAI46_04525 0.53 +1.2
977,473 - IAI46_04525 0.53 +0.1
977,476 + IAI46_04525 0.53 +0.0
977,476 + IAI46_04525 0.53 -0.6
977,477 - IAI46_04525 0.53 +0.6
977,477 - IAI46_04525 0.53 +0.4
977,477 - IAI46_04525 0.53 +0.2
977,477 - IAI46_04525 0.53 +1.2
977,505 + IAI46_04525 0.58 +0.6
977,505 + IAI46_04525 0.58 -0.4
977,505 + IAI46_04525 0.58 +0.8
977,506 - IAI46_04525 0.58 -0.6
977,533 + IAI46_04525 0.63 -0.9
977,624 - IAI46_04525 0.78 +0.2
977,658 + IAI46_04525 0.84 -0.1
977,665 + IAI46_04525 0.85 -0.2
977,665 + IAI46_04525 0.85 +0.2
977,667 + IAI46_04525 0.85 -0.2
977,668 - IAI46_04525 0.85 +0.8
977,668 - IAI46_04525 0.85 +0.2
977,668 - IAI46_04525 0.85 +1.2
977,692 + IAI46_04525 0.89 +0.9
977,692 + IAI46_04525 0.89 +0.4
977,692 + IAI46_04525 0.89 +0.3
977,692 + IAI46_04525 0.89 -0.0
977,693 - IAI46_04525 0.90 +0.2
977,695 - +1.0
977,707 + +0.4
977,707 + -0.1
977,707 + -0.2
977,707 + +1.1
977,707 + +0.7
977,707 + -0.7
977,707 + +0.1
977,708 - +0.7
977,708 - -0.1
977,708 - -1.2
977,708 - +0.6
977,709 + -0.4
977,709 + +0.5
977,709 + +0.7
977,710 - +0.1
977,710 - +0.3
977,710 - +1.3
977,787 - -0.5
978,172 - IAI46_04530 0.34 -0.7
978,237 - IAI46_04530 0.48 +0.5
978,250 + IAI46_04530 0.50 -0.3
978,592 + +1.1
978,593 - +0.7
978,648 + IAI46_04535 0.17 +0.1
978,648 + IAI46_04535 0.17 -0.6
978,670 + IAI46_04535 0.26 +0.5
978,696 + IAI46_04535 0.36 +1.2
978,731 + IAI46_04535 0.49 +0.1
978,731 + IAI46_04535 0.49 +0.1
978,732 - IAI46_04535 0.49 +0.7
978,732 - IAI46_04535 0.49 +0.5
978,785 + IAI46_04535 0.69 -0.2
978,796 + IAI46_04535 0.73 +0.9
978,796 + IAI46_04535 0.73 +0.4
978,797 - IAI46_04535 0.74 +0.3
978,903 + +0.8
978,903 + -0.5
978,989 - IAI46_04540 0.18 +0.7
979,023 + IAI46_04540 0.24 -0.3
979,023 + IAI46_04540 0.24 +0.4
979,024 - IAI46_04540 0.24 +0.4
979,024 - IAI46_04540 0.24 +0.5
979,051 + IAI46_04540 0.28 -0.1
979,051 + IAI46_04540 0.28 +0.6
979,308 + IAI46_04540 0.70 -0.1
979,362 + IAI46_04540 0.79 +0.2
979,399 + IAI46_04540 0.85 -0.1
979,400 - IAI46_04540 0.85 -0.0
979,466 + -0.4

Or see this region's nucleotide sequence