Strain Fitness in Serratia liquefaciens MT49 around IAI46_04325

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04320 and IAI46_04325 are separated by 144 nucleotidesIAI46_04325 and IAI46_04330 are separated by 85 nucleotidesIAI46_04330 and IAI46_04335 are separated by 288 nucleotides IAI46_04320: IAI46_04320 - S-methyl-5-thioribose-1-phosphate isomerase, at 925,810 to 926,838 _04320 IAI46_04325: IAI46_04325 - S-methyl-5-thioribose kinase, at 926,983 to 928,182 _04325 IAI46_04330: IAI46_04330 - Hok/Gef family protein, at 928,268 to 928,420 _04330 IAI46_04335: IAI46_04335 - acyl-CoA dehydrogenase, at 928,709 to 931,165 _04335 Position (kb) 926 927 928 929Strain fitness (log2 ratio) -2 -1 0 1 2at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.087 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.232 kb on - strand, within IAI46_04320at 926.239 kb on - strand, within IAI46_04320at 926.341 kb on + strand, within IAI46_04320at 926.344 kb on + strand, within IAI46_04320at 926.345 kb on - strand, within IAI46_04320at 926.345 kb on - strand, within IAI46_04320at 926.361 kb on + strand, within IAI46_04320at 926.391 kb on + strand, within IAI46_04320at 926.392 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.707 kb on - strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.712 kb on + strand, within IAI46_04320at 926.713 kb on - strand, within IAI46_04320at 926.732 kb on - strand, within IAI46_04320at 926.827 kb on - strandat 926.846 kb on + strandat 926.861 kb on + strandat 926.861 kb on + strandat 926.861 kb on + strandat 926.865 kb on + strandat 926.865 kb on + strandat 926.866 kb on - strandat 926.866 kb on - strandat 926.866 kb on - strandat 926.882 kb on + strandat 926.883 kb on - strandat 926.908 kb on + strandat 926.909 kb on - strandat 926.909 kb on - strandat 926.909 kb on - strandat 926.929 kb on - strandat 926.942 kb on - strandat 926.942 kb on - strandat 926.944 kb on + strandat 926.997 kb on + strandat 927.003 kb on + strandat 927.003 kb on + strandat 927.025 kb on + strandat 927.025 kb on + strandat 927.026 kb on - strandat 927.026 kb on - strandat 927.026 kb on - strandat 927.167 kb on - strand, within IAI46_04325at 927.167 kb on - strand, within IAI46_04325at 927.170 kb on + strand, within IAI46_04325at 927.170 kb on + strand, within IAI46_04325at 927.171 kb on - strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.264 kb on + strand, within IAI46_04325at 927.265 kb on - strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.365 kb on - strand, within IAI46_04325at 927.365 kb on - strand, within IAI46_04325at 927.367 kb on + strand, within IAI46_04325at 927.368 kb on - strand, within IAI46_04325at 927.398 kb on - strand, within IAI46_04325at 927.398 kb on - strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.433 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.527 kb on - strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.579 kb on - strand, within IAI46_04325at 927.589 kb on - strand, within IAI46_04325at 927.659 kb on + strand, within IAI46_04325at 927.660 kb on - strand, within IAI46_04325at 927.716 kb on + strand, within IAI46_04325at 927.716 kb on + strand, within IAI46_04325at 927.717 kb on - strand, within IAI46_04325at 927.736 kb on + strand, within IAI46_04325at 927.737 kb on - strand, within IAI46_04325at 927.790 kb on + strand, within IAI46_04325at 927.812 kb on + strand, within IAI46_04325at 927.992 kb on - strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.056 kb on + strand, within IAI46_04325at 928.056 kb on + strand, within IAI46_04325at 928.056 kb on + strand, within IAI46_04325at 928.057 kb on - strand, within IAI46_04325at 928.143 kb on + strandat 928.143 kb on + strandat 928.144 kb on - strandat 928.144 kb on - strandat 928.144 kb on - strandat 928.144 kb on - strandat 928.227 kb on + strandat 928.376 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.385 kb on - strand, within IAI46_04330at 928.385 kb on - strand, within IAI46_04330at 928.397 kb on - strand, within IAI46_04330at 928.397 kb on - strand, within IAI46_04330at 928.453 kb on + strandat 928.506 kb on - strandat 928.506 kb on - strandat 928.531 kb on - strandat 928.540 kb on + strandat 928.587 kb on + strandat 928.588 kb on - strandat 929.008 kb on + strand, within IAI46_04335at 929.116 kb on + strand, within IAI46_04335at 929.117 kb on - strand, within IAI46_04335at 929.117 kb on - strand, within IAI46_04335at 929.117 kb on - strand, within IAI46_04335

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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926,052 + IAI46_04320 0.24 -0.1
926,052 + IAI46_04320 0.24 -0.2
926,052 + IAI46_04320 0.24 +0.3
926,070 - IAI46_04320 0.25 +0.9
926,070 - IAI46_04320 0.25 +1.2
926,070 - IAI46_04320 0.25 -0.7
926,087 + IAI46_04320 0.27 +0.5
926,111 + IAI46_04320 0.29 -1.6
926,111 + IAI46_04320 0.29 +1.3
926,111 + IAI46_04320 0.29 +0.1
926,112 - IAI46_04320 0.29 +0.5
926,112 - IAI46_04320 0.29 +0.5
926,232 - IAI46_04320 0.41 +0.1
926,239 - IAI46_04320 0.42 -0.8
926,341 + IAI46_04320 0.52 -0.2
926,344 + IAI46_04320 0.52 +0.4
926,345 - IAI46_04320 0.52 -0.9
926,345 - IAI46_04320 0.52 +0.0
926,361 + IAI46_04320 0.54 -0.1
926,391 + IAI46_04320 0.56 -0.1
926,392 - IAI46_04320 0.57 +0.9
926,707 - IAI46_04320 0.87 +0.3
926,707 - IAI46_04320 0.87 +0.5
926,707 - IAI46_04320 0.87 -0.4
926,707 - IAI46_04320 0.87 +0.3
926,712 + IAI46_04320 0.88 -0.3
926,712 + IAI46_04320 0.88 -0.1
926,712 + IAI46_04320 0.88 +0.2
926,713 - IAI46_04320 0.88 +2.3
926,732 - IAI46_04320 0.90 +0.8
926,827 - +0.6
926,846 + +0.6
926,861 + +0.0
926,861 + +0.5
926,861 + +0.9
926,865 + -0.1
926,865 + -0.2
926,866 - +0.4
926,866 - +0.2
926,866 - -0.9
926,882 + -0.1
926,883 - +0.3
926,908 + +0.4
926,909 - -0.0
926,909 - -0.6
926,909 - +0.1
926,929 - -0.2
926,942 - +1.0
926,942 - +0.3
926,944 + +0.3
926,997 + +0.6
927,003 + -0.2
927,003 + +0.3
927,025 + +0.7
927,025 + +0.6
927,026 - -0.7
927,026 - -0.3
927,026 - +0.9
927,167 - IAI46_04325 0.15 -0.4
927,167 - IAI46_04325 0.15 -0.6
927,170 + IAI46_04325 0.16 +0.6
927,170 + IAI46_04325 0.16 +2.2
927,171 - IAI46_04325 0.16 -0.1
927,264 + IAI46_04325 0.23 +0.3
927,264 + IAI46_04325 0.23 +1.2
927,264 + IAI46_04325 0.23 +0.3
927,264 + IAI46_04325 0.23 -0.5
927,264 + IAI46_04325 0.23 +0.7
927,264 + IAI46_04325 0.23 +0.6
927,265 - IAI46_04325 0.23 -0.3
927,333 + IAI46_04325 0.29 -0.3
927,333 + IAI46_04325 0.29 +0.9
927,333 + IAI46_04325 0.29 +0.1
927,333 + IAI46_04325 0.29 +0.1
927,334 - IAI46_04325 0.29 +0.3
927,334 - IAI46_04325 0.29 +1.1
927,334 - IAI46_04325 0.29 +0.3
927,334 - IAI46_04325 0.29 -0.2
927,364 + IAI46_04325 0.32 +0.9
927,364 + IAI46_04325 0.32 -1.2
927,364 + IAI46_04325 0.32 +0.9
927,365 - IAI46_04325 0.32 +0.2
927,365 - IAI46_04325 0.32 -0.3
927,367 + IAI46_04325 0.32 -0.1
927,368 - IAI46_04325 0.32 +0.1
927,398 - IAI46_04325 0.35 -0.1
927,398 - IAI46_04325 0.35 +0.6
927,420 + IAI46_04325 0.36 +0.1
927,420 + IAI46_04325 0.36 -0.4
927,420 + IAI46_04325 0.36 +0.5
927,420 + IAI46_04325 0.36 +1.0
927,420 + IAI46_04325 0.36 -0.8
927,421 - IAI46_04325 0.36 -0.2
927,421 - IAI46_04325 0.36 -2.1
927,421 - IAI46_04325 0.36 +0.3
927,433 + IAI46_04325 0.38 -0.1
927,526 + IAI46_04325 0.45 +0.3
927,526 + IAI46_04325 0.45 -0.6
927,526 + IAI46_04325 0.45 +0.8
927,526 + IAI46_04325 0.45 +1.2
927,527 - IAI46_04325 0.45 -0.1
927,578 + IAI46_04325 0.50 -0.0
927,578 + IAI46_04325 0.50 +0.1
927,578 + IAI46_04325 0.50 -0.6
927,579 - IAI46_04325 0.50 -0.3
927,589 - IAI46_04325 0.51 +0.3
927,659 + IAI46_04325 0.56 +0.5
927,660 - IAI46_04325 0.56 +0.0
927,716 + IAI46_04325 0.61 -0.8
927,716 + IAI46_04325 0.61 +0.9
927,717 - IAI46_04325 0.61 +0.2
927,736 + IAI46_04325 0.63 +0.8
927,737 - IAI46_04325 0.63 +0.6
927,790 + IAI46_04325 0.67 +0.4
927,812 + IAI46_04325 0.69 -0.0
927,992 - IAI46_04325 0.84 -0.4
928,053 + IAI46_04325 0.89 +1.0
928,053 + IAI46_04325 0.89 -0.4
928,053 + IAI46_04325 0.89 -0.3
928,053 + IAI46_04325 0.89 +1.1
928,053 + IAI46_04325 0.89 +1.7
928,054 - IAI46_04325 0.89 -0.3
928,054 - IAI46_04325 0.89 +0.3
928,054 - IAI46_04325 0.89 -0.4
928,054 - IAI46_04325 0.89 +1.5
928,056 + IAI46_04325 0.89 -0.3
928,056 + IAI46_04325 0.89 +0.3
928,056 + IAI46_04325 0.89 +0.5
928,057 - IAI46_04325 0.90 -0.3
928,143 + +0.8
928,143 + -0.0
928,144 - -0.8
928,144 - +0.3
928,144 - +1.0
928,144 - -0.9
928,227 + -1.8
928,376 + IAI46_04330 0.71 +0.4
928,384 + IAI46_04330 0.76 -0.4
928,384 + IAI46_04330 0.76 +0.3
928,384 + IAI46_04330 0.76 +0.1
928,384 + IAI46_04330 0.76 +0.0
928,385 - IAI46_04330 0.76 +0.4
928,385 - IAI46_04330 0.76 -0.5
928,397 - IAI46_04330 0.84 +1.2
928,397 - IAI46_04330 0.84 -0.2
928,453 + +0.4
928,506 - -0.0
928,506 - +0.0
928,531 - +1.1
928,540 + +0.0
928,587 + +1.5
928,588 - -0.2
929,008 + IAI46_04335 0.12 +0.5
929,116 + IAI46_04335 0.17 +0.2
929,117 - IAI46_04335 0.17 -0.3
929,117 - IAI46_04335 0.17 +0.6
929,117 - IAI46_04335 0.17 -0.9

Or see this region's nucleotide sequence