Strain Fitness in Serratia liquefaciens MT49 around IAI46_03040

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03030 and IAI46_03035 are separated by 1 nucleotidesIAI46_03035 and IAI46_03040 are separated by 3 nucleotidesIAI46_03040 and IAI46_03045 are separated by 63 nucleotidesIAI46_03045 and IAI46_03050 are separated by 105 nucleotides IAI46_03030: IAI46_03030 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 644,993 to 647,452 _03030 IAI46_03035: IAI46_03035 - homoserine kinase, at 647,454 to 648,383 _03035 IAI46_03040: IAI46_03040 - threonine synthase, at 648,387 to 649,676 _03040 IAI46_03045: IAI46_03045 - peroxide stress protein YaaA, at 649,740 to 650,513 _03045 IAI46_03050: IAI46_03050 - sodium:alanine symporter family protein, at 650,619 to 652,043 _03050 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 647.450 kb on + strandat 647.450 kb on + strandat 647.450 kb on + strandat 647.450 kb on + strandat 647.450 kb on + strandat 647.451 kb on - strandat 647.453 kb on + strandat 647.453 kb on + strandat 647.453 kb on + strandat 647.453 kb on + strandat 647.454 kb on - strandat 647.459 kb on + strandat 647.459 kb on + strandat 647.460 kb on - strandat 647.466 kb on + strandat 647.466 kb on + strandat 647.467 kb on - strandat 647.491 kb on + strandat 647.491 kb on + strandat 647.492 kb on - strandat 647.492 kb on - strandat 647.492 kb on - strandat 647.492 kb on - strandat 647.492 kb on - strandat 647.540 kb on + strandat 647.540 kb on + strandat 647.649 kb on + strand, within IAI46_03035at 647.650 kb on - strand, within IAI46_03035at 647.650 kb on - strand, within IAI46_03035at 647.650 kb on - strand, within IAI46_03035at 647.892 kb on + strand, within IAI46_03035at 647.892 kb on + strand, within IAI46_03035at 647.893 kb on - strand, within IAI46_03035at 647.893 kb on - strand, within IAI46_03035at 647.893 kb on - strand, within IAI46_03035at 647.957 kb on + strand, within IAI46_03035at 647.983 kb on - strand, within IAI46_03035at 648.069 kb on + strand, within IAI46_03035at 648.070 kb on - strand, within IAI46_03035at 648.084 kb on - strand, within IAI46_03035at 648.084 kb on - strand, within IAI46_03035at 648.084 kb on - strand, within IAI46_03035at 648.084 kb on - strand, within IAI46_03035at 648.154 kb on - strand, within IAI46_03035at 648.154 kb on - strand, within IAI46_03035at 648.208 kb on + strand, within IAI46_03035at 648.208 kb on + strand, within IAI46_03035at 648.208 kb on + strand, within IAI46_03035at 648.208 kb on + strand, within IAI46_03035at 648.208 kb on + strand, within IAI46_03035at 648.208 kb on + strand, within IAI46_03035at 648.209 kb on - strand, within IAI46_03035at 648.209 kb on - strand, within IAI46_03035at 648.209 kb on - strand, within IAI46_03035at 648.209 kb on - strand, within IAI46_03035at 648.209 kb on - strand, within IAI46_03035at 648.209 kb on - strand, within IAI46_03035at 648.209 kb on - strand, within IAI46_03035at 648.305 kb on + strandat 648.313 kb on - strandat 648.342 kb on - strandat 648.342 kb on - strandat 648.373 kb on + strandat 648.373 kb on + strandat 648.374 kb on - strandat 648.397 kb on - strandat 648.404 kb on + strandat 648.404 kb on + strandat 648.605 kb on + strand, within IAI46_03040at 648.605 kb on + strand, within IAI46_03040at 648.704 kb on + strand, within IAI46_03040at 648.725 kb on + strand, within IAI46_03040at 648.771 kb on - strand, within IAI46_03040at 648.771 kb on - strand, within IAI46_03040at 648.822 kb on + strand, within IAI46_03040at 648.822 kb on + strand, within IAI46_03040at 649.032 kb on - strand, within IAI46_03040at 649.100 kb on + strand, within IAI46_03040at 649.100 kb on + strand, within IAI46_03040at 649.101 kb on - strand, within IAI46_03040at 649.101 kb on - strand, within IAI46_03040at 649.101 kb on - strand, within IAI46_03040at 649.101 kb on - strand, within IAI46_03040at 649.101 kb on - strand, within IAI46_03040at 649.101 kb on - strand, within IAI46_03040at 649.131 kb on - strand, within IAI46_03040at 649.217 kb on + strand, within IAI46_03040at 649.218 kb on - strand, within IAI46_03040at 649.218 kb on - strand, within IAI46_03040at 649.307 kb on + strand, within IAI46_03040at 649.308 kb on - strand, within IAI46_03040at 649.429 kb on - strand, within IAI46_03040at 649.649 kb on + strandat 649.650 kb on - strandat 649.650 kb on - strandat 649.691 kb on + strandat 649.691 kb on + strandat 649.692 kb on - strandat 649.859 kb on + strand, within IAI46_03045at 649.859 kb on + strand, within IAI46_03045at 649.859 kb on + strand, within IAI46_03045at 649.860 kb on - strand, within IAI46_03045at 649.860 kb on - strand, within IAI46_03045at 649.860 kb on - strand, within IAI46_03045at 649.862 kb on - strand, within IAI46_03045at 649.862 kb on - strand, within IAI46_03045at 649.895 kb on - strand, within IAI46_03045at 649.913 kb on - strand, within IAI46_03045at 649.913 kb on - strand, within IAI46_03045at 649.913 kb on - strand, within IAI46_03045at 649.990 kb on + strand, within IAI46_03045at 650.083 kb on + strand, within IAI46_03045at 650.170 kb on + strand, within IAI46_03045at 650.171 kb on - strand, within IAI46_03045at 650.252 kb on - strand, within IAI46_03045at 650.252 kb on - strand, within IAI46_03045at 650.421 kb on - strand, within IAI46_03045at 650.476 kb on + strandat 650.477 kb on - strandat 650.501 kb on + strandat 650.502 kb on - strandat 650.502 kb on - strandat 650.502 kb on - strandat 650.542 kb on + strandat 650.543 kb on - strandat 650.547 kb on + strandat 650.547 kb on + strandat 650.585 kb on - strandat 650.585 kb on - strandat 650.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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647,450 + -0.8
647,450 + -2.1
647,450 + -0.3
647,450 + -1.6
647,450 + -2.9
647,451 - -0.0
647,453 + -0.0
647,453 + -0.4
647,453 + +0.1
647,453 + +0.1
647,454 - -0.7
647,459 + -0.2
647,459 + -1.4
647,460 - +0.2
647,466 + -1.0
647,466 + +1.5
647,467 - -2.6
647,491 + -1.1
647,491 + -1.5
647,492 - -1.1
647,492 - -1.5
647,492 - -0.5
647,492 - -0.1
647,492 - -0.4
647,540 + -2.7
647,540 + -1.6
647,649 + IAI46_03035 0.21 -1.2
647,650 - IAI46_03035 0.21 -1.7
647,650 - IAI46_03035 0.21 -0.1
647,650 - IAI46_03035 0.21 -1.0
647,892 + IAI46_03035 0.47 -0.7
647,892 + IAI46_03035 0.47 -0.7
647,893 - IAI46_03035 0.47 -1.4
647,893 - IAI46_03035 0.47 -0.5
647,893 - IAI46_03035 0.47 +0.0
647,957 + IAI46_03035 0.54 -0.4
647,983 - IAI46_03035 0.57 -0.5
648,069 + IAI46_03035 0.66 -1.0
648,070 - IAI46_03035 0.66 -1.0
648,084 - IAI46_03035 0.68 -0.9
648,084 - IAI46_03035 0.68 -1.2
648,084 - IAI46_03035 0.68 -1.4
648,084 - IAI46_03035 0.68 +2.0
648,154 - IAI46_03035 0.75 -0.6
648,154 - IAI46_03035 0.75 -1.6
648,208 + IAI46_03035 0.81 -0.3
648,208 + IAI46_03035 0.81 -0.3
648,208 + IAI46_03035 0.81 -0.7
648,208 + IAI46_03035 0.81 -0.6
648,208 + IAI46_03035 0.81 -1.3
648,208 + IAI46_03035 0.81 -0.5
648,209 - IAI46_03035 0.81 -1.3
648,209 - IAI46_03035 0.81 +0.1
648,209 - IAI46_03035 0.81 -1.3
648,209 - IAI46_03035 0.81 -0.5
648,209 - IAI46_03035 0.81 -0.1
648,209 - IAI46_03035 0.81 -0.3
648,209 - IAI46_03035 0.81 -0.6
648,305 + -1.8
648,313 - -0.4
648,342 - -0.3
648,342 - -0.4
648,373 + +0.1
648,373 + -0.5
648,374 - +1.4
648,397 - +1.2
648,404 + -0.3
648,404 + +1.3
648,605 + IAI46_03040 0.17 -0.8
648,605 + IAI46_03040 0.17 -2.1
648,704 + IAI46_03040 0.25 -2.8
648,725 + IAI46_03040 0.26 -0.9
648,771 - IAI46_03040 0.30 +0.5
648,771 - IAI46_03040 0.30 -0.5
648,822 + IAI46_03040 0.34 -0.8
648,822 + IAI46_03040 0.34 -0.2
649,032 - IAI46_03040 0.50 -0.2
649,100 + IAI46_03040 0.55 -1.2
649,100 + IAI46_03040 0.55 +0.5
649,101 - IAI46_03040 0.55 -0.3
649,101 - IAI46_03040 0.55 -0.8
649,101 - IAI46_03040 0.55 -1.8
649,101 - IAI46_03040 0.55 -0.8
649,101 - IAI46_03040 0.55 -0.2
649,101 - IAI46_03040 0.55 -0.6
649,131 - IAI46_03040 0.58 -0.3
649,217 + IAI46_03040 0.64 -1.2
649,218 - IAI46_03040 0.64 -0.2
649,218 - IAI46_03040 0.64 -1.0
649,307 + IAI46_03040 0.71 +0.2
649,308 - IAI46_03040 0.71 +0.4
649,429 - IAI46_03040 0.81 -0.1
649,649 + -0.1
649,650 - -0.5
649,650 - -0.2
649,691 + +0.7
649,691 + -0.2
649,692 - +0.5
649,859 + IAI46_03045 0.15 -0.1
649,859 + IAI46_03045 0.15 -0.2
649,859 + IAI46_03045 0.15 +0.6
649,860 - IAI46_03045 0.16 -0.4
649,860 - IAI46_03045 0.16 -0.9
649,860 - IAI46_03045 0.16 -0.9
649,862 - IAI46_03045 0.16 -0.3
649,862 - IAI46_03045 0.16 -0.6
649,895 - IAI46_03045 0.20 +0.8
649,913 - IAI46_03045 0.22 +0.0
649,913 - IAI46_03045 0.22 -1.4
649,913 - IAI46_03045 0.22 -0.9
649,990 + IAI46_03045 0.32 -0.6
650,083 + IAI46_03045 0.44 +0.0
650,170 + IAI46_03045 0.56 -0.4
650,171 - IAI46_03045 0.56 -1.3
650,252 - IAI46_03045 0.66 -0.9
650,252 - IAI46_03045 0.66 +0.2
650,421 - IAI46_03045 0.88 -2.1
650,476 + +0.7
650,477 - -0.6
650,501 + +1.3
650,502 - -0.3
650,502 - +0.0
650,502 - +0.4
650,542 + +0.1
650,543 - -0.1
650,547 + -1.8
650,547 + -0.7
650,585 - +0.4
650,585 - +0.1
650,635 - +0.0

Or see this region's nucleotide sequence