Strain Fitness in Serratia liquefaciens MT49 around IAI46_02735

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02725 and IAI46_02730 overlap by 4 nucleotidesIAI46_02730 and IAI46_02735 overlap by 4 nucleotidesIAI46_02735 and IAI46_02740 are separated by 37 nucleotides IAI46_02725: IAI46_02725 - fumarylacetoacetate hydrolase family protein, at 587,566 to 588,198 _02725 IAI46_02730: IAI46_02730 - fumarylacetoacetate hydrolase family protein, at 588,195 to 588,959 _02730 IAI46_02735: IAI46_02735 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 588,956 to 590,410 _02735 IAI46_02740: IAI46_02740 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 590,448 to 591,521 _02740 Position (kb) 588 589 590 591Strain fitness (log2 ratio) -1 0 1 2at 587.969 kb on - strand, within IAI46_02725at 588.055 kb on - strand, within IAI46_02725at 588.055 kb on - strand, within IAI46_02725at 588.173 kb on + strandat 588.233 kb on + strandat 588.234 kb on - strandat 588.351 kb on + strand, within IAI46_02730at 588.471 kb on + strand, within IAI46_02730at 588.471 kb on + strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.480 kb on + strand, within IAI46_02730at 588.481 kb on - strand, within IAI46_02730at 588.549 kb on + strand, within IAI46_02730at 588.550 kb on - strand, within IAI46_02730at 588.550 kb on - strand, within IAI46_02730at 588.561 kb on + strand, within IAI46_02730at 588.562 kb on - strand, within IAI46_02730at 588.580 kb on - strand, within IAI46_02730at 588.606 kb on + strand, within IAI46_02730at 588.610 kb on - strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.664 kb on - strand, within IAI46_02730at 588.717 kb on + strand, within IAI46_02730at 588.717 kb on + strand, within IAI46_02730at 588.717 kb on + strand, within IAI46_02730at 588.778 kb on - strand, within IAI46_02730at 588.789 kb on + strand, within IAI46_02730at 588.790 kb on - strand, within IAI46_02730at 589.007 kb on + strandat 589.015 kb on + strandat 589.015 kb on + strandat 589.322 kb on + strand, within IAI46_02735at 589.323 kb on - strand, within IAI46_02735at 589.323 kb on - strand, within IAI46_02735at 589.349 kb on + strand, within IAI46_02735at 589.349 kb on + strand, within IAI46_02735at 589.350 kb on - strand, within IAI46_02735at 589.350 kb on - strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.598 kb on - strand, within IAI46_02735at 589.598 kb on - strand, within IAI46_02735at 589.810 kb on + strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 590.165 kb on + strand, within IAI46_02735at 590.165 kb on + strand, within IAI46_02735at 590.180 kb on + strand, within IAI46_02735at 590.180 kb on + strand, within IAI46_02735at 590.181 kb on - strand, within IAI46_02735at 590.181 kb on - strand, within IAI46_02735at 590.228 kb on - strand, within IAI46_02735at 590.426 kb on - strandat 590.426 kb on - strandat 590.463 kb on - strandat 590.505 kb on + strandat 590.505 kb on + strandat 590.505 kb on + strandat 590.506 kb on - strandat 590.506 kb on - strandat 590.531 kb on + strandat 590.532 kb on - strandat 590.550 kb on + strandat 590.601 kb on + strand, within IAI46_02740at 590.602 kb on - strand, within IAI46_02740at 590.602 kb on - strand, within IAI46_02740at 590.602 kb on - strand, within IAI46_02740at 590.624 kb on + strand, within IAI46_02740at 590.633 kb on + strand, within IAI46_02740at 590.633 kb on + strand, within IAI46_02740at 590.634 kb on - strand, within IAI46_02740at 590.693 kb on + strand, within IAI46_02740at 590.724 kb on + strand, within IAI46_02740at 590.725 kb on - strand, within IAI46_02740at 590.835 kb on + strand, within IAI46_02740at 590.836 kb on - strand, within IAI46_02740at 590.836 kb on - strand, within IAI46_02740at 590.871 kb on + strand, within IAI46_02740at 590.871 kb on + strand, within IAI46_02740at 590.872 kb on - strand, within IAI46_02740at 590.881 kb on - strand, within IAI46_02740at 590.881 kb on - strand, within IAI46_02740at 590.952 kb on + strand, within IAI46_02740at 590.952 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.089 kb on + strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.090 kb on - strand, within IAI46_02740at 591.210 kb on + strand, within IAI46_02740at 591.210 kb on + strand, within IAI46_02740at 591.211 kb on - strand, within IAI46_02740at 591.211 kb on - strand, within IAI46_02740at 591.216 kb on + strand, within IAI46_02740at 591.244 kb on + strand, within IAI46_02740at 591.244 kb on + strand, within IAI46_02740at 591.252 kb on + strand, within IAI46_02740at 591.252 kb on + strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.253 kb on - strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.264 kb on + strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.265 kb on - strand, within IAI46_02740at 591.267 kb on + strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740at 591.268 kb on - strand, within IAI46_02740

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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587,969 - IAI46_02725 0.64 -0.1
588,055 - IAI46_02725 0.77 +0.9
588,055 - IAI46_02725 0.77 -0.2
588,173 + +0.1
588,233 + +0.6
588,234 - +0.0
588,351 + IAI46_02730 0.20 +0.2
588,471 + IAI46_02730 0.36 +0.1
588,471 + IAI46_02730 0.36 +0.3
588,472 - IAI46_02730 0.36 +0.2
588,472 - IAI46_02730 0.36 +0.5
588,472 - IAI46_02730 0.36 +0.0
588,472 - IAI46_02730 0.36 +0.6
588,473 + IAI46_02730 0.36 -0.2
588,473 + IAI46_02730 0.36 +0.3
588,473 + IAI46_02730 0.36 -0.4
588,473 + IAI46_02730 0.36 +0.2
588,473 + IAI46_02730 0.36 -0.0
588,473 + IAI46_02730 0.36 +0.5
588,474 - IAI46_02730 0.36 +2.0
588,474 - IAI46_02730 0.36 -0.6
588,474 - IAI46_02730 0.36 +0.1
588,474 - IAI46_02730 0.36 +0.6
588,480 + IAI46_02730 0.37 +0.5
588,481 - IAI46_02730 0.37 +0.3
588,549 + IAI46_02730 0.46 -0.5
588,550 - IAI46_02730 0.46 -0.2
588,550 - IAI46_02730 0.46 +0.6
588,561 + IAI46_02730 0.48 +1.3
588,562 - IAI46_02730 0.48 -0.3
588,580 - IAI46_02730 0.50 -0.8
588,606 + IAI46_02730 0.54 -0.5
588,610 - IAI46_02730 0.54 +0.4
588,663 + IAI46_02730 0.61 -0.6
588,663 + IAI46_02730 0.61 +0.1
588,663 + IAI46_02730 0.61 +0.3
588,663 + IAI46_02730 0.61 -0.4
588,663 + IAI46_02730 0.61 +0.3
588,663 + IAI46_02730 0.61 +0.1
588,664 - IAI46_02730 0.61 +0.1
588,717 + IAI46_02730 0.68 +0.1
588,717 + IAI46_02730 0.68 -0.0
588,717 + IAI46_02730 0.68 +0.3
588,778 - IAI46_02730 0.76 -0.1
588,789 + IAI46_02730 0.78 +0.8
588,790 - IAI46_02730 0.78 -0.6
589,007 + +1.2
589,015 + +0.6
589,015 + +0.2
589,322 + IAI46_02735 0.25 +0.1
589,323 - IAI46_02735 0.25 -0.6
589,323 - IAI46_02735 0.25 -0.3
589,349 + IAI46_02735 0.27 +0.2
589,349 + IAI46_02735 0.27 +1.0
589,350 - IAI46_02735 0.27 -0.1
589,350 - IAI46_02735 0.27 +0.5
589,597 + IAI46_02735 0.44 -0.0
589,597 + IAI46_02735 0.44 +0.2
589,597 + IAI46_02735 0.44 -0.6
589,598 - IAI46_02735 0.44 +0.4
589,598 - IAI46_02735 0.44 +0.7
589,810 + IAI46_02735 0.59 +0.8
589,950 - IAI46_02735 0.68 +0.6
589,950 - IAI46_02735 0.68 -0.0
589,950 - IAI46_02735 0.68 +0.4
590,165 + IAI46_02735 0.83 -0.0
590,165 + IAI46_02735 0.83 -0.3
590,180 + IAI46_02735 0.84 +0.3
590,180 + IAI46_02735 0.84 +0.5
590,181 - IAI46_02735 0.84 +0.2
590,181 - IAI46_02735 0.84 -0.9
590,228 - IAI46_02735 0.87 -1.5
590,426 - +0.8
590,426 - +0.2
590,463 - +0.2
590,505 + +0.5
590,505 + -0.4
590,505 + -0.0
590,506 - +0.5
590,506 - +0.3
590,531 + +0.5
590,532 - +0.2
590,550 + -0.1
590,601 + IAI46_02740 0.14 +0.5
590,602 - IAI46_02740 0.14 +0.0
590,602 - IAI46_02740 0.14 +0.5
590,602 - IAI46_02740 0.14 -0.1
590,624 + IAI46_02740 0.16 +1.0
590,633 + IAI46_02740 0.17 -0.5
590,633 + IAI46_02740 0.17 +0.6
590,634 - IAI46_02740 0.17 +1.5
590,693 + IAI46_02740 0.23 +1.0
590,724 + IAI46_02740 0.26 +0.0
590,725 - IAI46_02740 0.26 -0.5
590,835 + IAI46_02740 0.36 -0.1
590,836 - IAI46_02740 0.36 -1.1
590,836 - IAI46_02740 0.36 +1.1
590,871 + IAI46_02740 0.39 +0.7
590,871 + IAI46_02740 0.39 +0.4
590,872 - IAI46_02740 0.39 -0.0
590,881 - IAI46_02740 0.40 +1.5
590,881 - IAI46_02740 0.40 +1.2
590,952 + IAI46_02740 0.47 -0.7
590,952 + IAI46_02740 0.47 +0.7
591,089 + IAI46_02740 0.60 +0.7
591,089 + IAI46_02740 0.60 +1.4
591,089 + IAI46_02740 0.60 -0.4
591,090 - IAI46_02740 0.60 -0.2
591,090 - IAI46_02740 0.60 +0.7
591,090 - IAI46_02740 0.60 +0.8
591,090 - IAI46_02740 0.60 +0.5
591,210 + IAI46_02740 0.71 -0.1
591,210 + IAI46_02740 0.71 -0.1
591,211 - IAI46_02740 0.71 -0.5
591,211 - IAI46_02740 0.71 -0.5
591,216 + IAI46_02740 0.72 -0.5
591,244 + IAI46_02740 0.74 +0.1
591,244 + IAI46_02740 0.74 +0.9
591,252 + IAI46_02740 0.75 +0.2
591,252 + IAI46_02740 0.75 +0.7
591,253 - IAI46_02740 0.75 +0.9
591,253 - IAI46_02740 0.75 +0.8
591,253 - IAI46_02740 0.75 +0.1
591,264 + IAI46_02740 0.76 -0.7
591,264 + IAI46_02740 0.76 +0.2
591,264 + IAI46_02740 0.76 +1.5
591,265 - IAI46_02740 0.76 +0.7
591,265 - IAI46_02740 0.76 +0.4
591,265 - IAI46_02740 0.76 +0.2
591,267 + IAI46_02740 0.76 +0.1
591,268 - IAI46_02740 0.76 +0.1
591,268 - IAI46_02740 0.76 +0.5
591,268 - IAI46_02740 0.76 +0.1

Or see this region's nucleotide sequence