Strain Fitness in Serratia liquefaciens MT49 around IAI46_01070

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01060 and IAI46_01065 are separated by 79 nucleotidesIAI46_01065 and IAI46_01070 are separated by 13 nucleotidesIAI46_01070 and IAI46_01075 overlap by 4 nucleotides IAI46_01060: IAI46_01060 - DNA recombination protein RmuC, at 236,391 to 237,938 _01060 IAI46_01065: IAI46_01065 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 238,018 to 238,773 _01065 IAI46_01070: IAI46_01070 - SCP2 domain-containing protein, at 238,787 to 239,395 _01070 IAI46_01075: IAI46_01075 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 239,392 to 241,023 _01075 Position (kb) 238 239 240Strain fitness (log2 ratio) -1 0 1 2 3at 237.797 kb on + strandat 237.991 kb on + strandat 238.774 kb on + strandat 238.774 kb on + strandat 238.902 kb on + strand, within IAI46_01070at 239.089 kb on + strand, within IAI46_01070at 239.100 kb on + strand, within IAI46_01070

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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237,797 + +0.2
237,991 + -0.5
238,774 + -0.0
238,774 + +3.0
238,902 + IAI46_01070 0.19 +0.2
239,089 + IAI46_01070 0.50 +0.3
239,100 + IAI46_01070 0.51 -1.7

Or see this region's nucleotide sequence