Strain Fitness in Serratia liquefaciens MT49 around IAI46_00915

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00905 and IAI46_00910 are separated by 127 nucleotidesIAI46_00910 and IAI46_00915 are separated by 27 nucleotidesIAI46_00915 and IAI46_00920 overlap by 11 nucleotidesIAI46_00920 and IAI46_00925 are separated by 220 nucleotides IAI46_00905: IAI46_00905 - response regulator transcription factor, at 204,079 to 204,759 _00905 IAI46_00910: IAI46_00910 - DUF2500 domain-containing protein, at 204,887 to 205,243 _00910 IAI46_00915: IAI46_00915 - DUF1145 family protein, at 205,271 to 205,543 _00915 IAI46_00920: IAI46_00920 - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 205,533 to 206,153 _00920 IAI46_00925: IAI46_00925 - signal recognition particle-docking protein FtsY, at 206,374 to 208,059 _00925 Position (kb) 205 206Strain fitness (log2 ratio) -1 0 1at 204.273 kb on + strand, within IAI46_00905at 204.273 kb on + strand, within IAI46_00905at 204.277 kb on + strand, within IAI46_00905at 204.277 kb on + strand, within IAI46_00905at 204.277 kb on + strand, within IAI46_00905at 204.278 kb on - strand, within IAI46_00905at 204.478 kb on + strand, within IAI46_00905at 204.710 kb on - strandat 204.767 kb on + strandat 204.779 kb on + strandat 204.779 kb on + strandat 204.780 kb on - strandat 204.780 kb on - strandat 204.788 kb on + strandat 204.789 kb on - strandat 204.809 kb on - strandat 204.852 kb on + strandat 204.852 kb on + strandat 204.852 kb on + strandat 204.853 kb on - strandat 204.883 kb on + strandat 204.884 kb on - strandat 204.884 kb on - strandat 204.892 kb on + strandat 204.892 kb on + strandat 204.892 kb on + strandat 204.892 kb on + strandat 204.954 kb on - strand, within IAI46_00910at 204.954 kb on - strand, within IAI46_00910at 205.027 kb on + strand, within IAI46_00910at 205.028 kb on - strand, within IAI46_00910at 205.097 kb on + strand, within IAI46_00910at 205.097 kb on + strand, within IAI46_00910at 205.097 kb on + strand, within IAI46_00910at 205.163 kb on + strand, within IAI46_00910at 205.163 kb on + strand, within IAI46_00910at 205.165 kb on + strand, within IAI46_00910at 205.166 kb on - strand, within IAI46_00910at 205.228 kb on + strandat 205.228 kb on + strandat 205.229 kb on - strandat 205.242 kb on - strandat 205.356 kb on + strand, within IAI46_00915at 205.356 kb on + strand, within IAI46_00915at 205.357 kb on - strand, within IAI46_00915at 205.426 kb on + strand, within IAI46_00915at 205.427 kb on - strand, within IAI46_00915at 205.534 kb on + strandat 205.568 kb on + strandat 205.568 kb on + strandat 205.569 kb on - strandat 205.569 kb on - strandat 205.569 kb on - strandat 205.570 kb on + strandat 205.570 kb on + strandat 205.580 kb on - strandat 205.611 kb on + strand, within IAI46_00920at 205.611 kb on + strand, within IAI46_00920at 205.612 kb on - strand, within IAI46_00920at 205.612 kb on - strand, within IAI46_00920at 205.663 kb on - strand, within IAI46_00920at 205.666 kb on + strand, within IAI46_00920at 205.666 kb on + strand, within IAI46_00920at 205.666 kb on + strand, within IAI46_00920at 205.667 kb on - strand, within IAI46_00920at 205.667 kb on - strand, within IAI46_00920at 205.667 kb on - strand, within IAI46_00920at 205.667 kb on - strand, within IAI46_00920at 205.808 kb on + strand, within IAI46_00920at 205.809 kb on - strand, within IAI46_00920at 205.906 kb on + strand, within IAI46_00920at 205.906 kb on + strand, within IAI46_00920at 206.143 kb on - strandat 206.143 kb on - strandat 206.153 kb on + strandat 206.153 kb on + strandat 206.154 kb on - strandat 206.154 kb on - strandat 206.202 kb on + strandat 206.202 kb on + strandat 206.214 kb on - strandat 206.214 kb on - strandat 206.214 kb on - strandat 206.218 kb on + strandat 206.218 kb on + strandat 206.247 kb on - strandat 206.329 kb on + strandat 206.329 kb on + strandat 206.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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204,273 + IAI46_00905 0.28 -0.0
204,273 + IAI46_00905 0.28 +0.2
204,277 + IAI46_00905 0.29 +0.4
204,277 + IAI46_00905 0.29 -0.3
204,277 + IAI46_00905 0.29 +0.5
204,278 - IAI46_00905 0.29 -0.7
204,478 + IAI46_00905 0.59 -0.1
204,710 - +0.6
204,767 + +0.6
204,779 + +0.4
204,779 + +0.8
204,780 - +1.0
204,780 - -0.0
204,788 + -0.6
204,789 - +0.0
204,809 - +0.4
204,852 + +1.2
204,852 + +0.6
204,852 + -0.2
204,853 - -0.4
204,883 + +0.7
204,884 - +0.4
204,884 - +0.5
204,892 + -0.3
204,892 + +0.9
204,892 + +0.4
204,892 + +0.6
204,954 - IAI46_00910 0.19 +0.9
204,954 - IAI46_00910 0.19 -0.6
205,027 + IAI46_00910 0.39 +1.0
205,028 - IAI46_00910 0.39 -0.3
205,097 + IAI46_00910 0.59 -0.6
205,097 + IAI46_00910 0.59 +0.6
205,097 + IAI46_00910 0.59 +0.1
205,163 + IAI46_00910 0.77 -0.5
205,163 + IAI46_00910 0.77 -0.2
205,165 + IAI46_00910 0.78 +0.5
205,166 - IAI46_00910 0.78 -0.7
205,228 + +1.0
205,228 + +0.0
205,229 - -0.2
205,242 - +0.2
205,356 + IAI46_00915 0.31 +0.3
205,356 + IAI46_00915 0.31 +1.0
205,357 - IAI46_00915 0.32 +0.6
205,426 + IAI46_00915 0.57 -0.7
205,427 - IAI46_00915 0.57 +0.2
205,534 + +0.3
205,568 + +0.2
205,568 + -0.5
205,569 - +0.0
205,569 - +0.5
205,569 - +0.0
205,570 + -0.3
205,570 + +1.0
205,580 - +0.4
205,611 + IAI46_00920 0.13 -0.2
205,611 + IAI46_00920 0.13 -0.2
205,612 - IAI46_00920 0.13 +0.1
205,612 - IAI46_00920 0.13 -0.5
205,663 - IAI46_00920 0.21 -0.4
205,666 + IAI46_00920 0.21 +1.1
205,666 + IAI46_00920 0.21 +0.6
205,666 + IAI46_00920 0.21 -0.2
205,667 - IAI46_00920 0.22 -0.6
205,667 - IAI46_00920 0.22 -0.7
205,667 - IAI46_00920 0.22 +0.3
205,667 - IAI46_00920 0.22 +0.2
205,808 + IAI46_00920 0.44 +0.2
205,809 - IAI46_00920 0.44 +0.1
205,906 + IAI46_00920 0.60 +0.7
205,906 + IAI46_00920 0.60 -0.6
206,143 - -0.1
206,143 - +0.3
206,153 + -1.3
206,153 + -0.0
206,154 - -0.1
206,154 - +0.5
206,202 + +0.1
206,202 + -0.3
206,214 - -0.5
206,214 - +0.1
206,214 - +0.2
206,218 + +0.3
206,218 + +0.7
206,247 - +0.0
206,329 + +1.0
206,329 + +0.3
206,340 + -0.2

Or see this region's nucleotide sequence