Strain Fitness in Serratia liquefaciens MT49 around IAI46_00705

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00700 and IAI46_00705 are separated by 49 nucleotidesIAI46_00705 and IAI46_00710 are separated by 72 nucleotidesIAI46_00710 and IAI46_00715 are separated by 58 nucleotides IAI46_00700: IAI46_00700 - class I adenylate cyclase, at 160,822 to 163,374 _00700 IAI46_00705: IAI46_00705 - iron donor protein CyaY, at 163,424 to 163,744 _00705 IAI46_00710: IAI46_00710 - lipoprotein, at 163,817 to 164,029 _00710 IAI46_00715: IAI46_00715 - diaminopimelate epimerase, at 164,088 to 164,912 _00715 Position (kb) 163 164Strain fitness (log2 ratio) -1 0 1 2at 162.451 kb on + strand, within IAI46_00700at 162.452 kb on - strand, within IAI46_00700at 162.452 kb on - strand, within IAI46_00700at 162.452 kb on - strand, within IAI46_00700at 162.560 kb on + strand, within IAI46_00700at 162.640 kb on - strand, within IAI46_00700at 162.745 kb on + strand, within IAI46_00700at 162.745 kb on + strand, within IAI46_00700at 162.746 kb on - strand, within IAI46_00700at 162.782 kb on + strand, within IAI46_00700at 162.783 kb on - strand, within IAI46_00700at 162.804 kb on + strand, within IAI46_00700at 162.804 kb on + strand, within IAI46_00700at 162.812 kb on + strand, within IAI46_00700at 162.812 kb on + strand, within IAI46_00700at 162.940 kb on + strand, within IAI46_00700at 163.087 kb on - strand, within IAI46_00700at 163.093 kb on + strand, within IAI46_00700at 163.093 kb on + strand, within IAI46_00700at 163.094 kb on - strand, within IAI46_00700at 163.094 kb on - strand, within IAI46_00700at 163.094 kb on - strand, within IAI46_00700at 163.126 kb on + strandat 163.127 kb on - strandat 163.146 kb on + strandat 163.146 kb on + strandat 163.146 kb on + strandat 163.246 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.253 kb on + strandat 163.254 kb on - strandat 163.254 kb on - strandat 163.375 kb on + strandat 163.482 kb on + strand, within IAI46_00705at 163.482 kb on + strand, within IAI46_00705at 163.483 kb on - strand, within IAI46_00705at 163.527 kb on + strand, within IAI46_00705at 163.528 kb on - strand, within IAI46_00705at 163.528 kb on - strand, within IAI46_00705at 163.531 kb on + strand, within IAI46_00705at 163.531 kb on + strand, within IAI46_00705at 163.531 kb on + strand, within IAI46_00705at 163.532 kb on - strand, within IAI46_00705at 163.532 kb on - strand, within IAI46_00705at 163.622 kb on + strand, within IAI46_00705at 163.623 kb on - strand, within IAI46_00705at 163.623 kb on - strand, within IAI46_00705at 163.623 kb on - strand, within IAI46_00705at 163.631 kb on + strand, within IAI46_00705at 163.631 kb on + strand, within IAI46_00705at 163.632 kb on - strand, within IAI46_00705at 163.632 kb on - strand, within IAI46_00705at 163.642 kb on + strand, within IAI46_00705at 163.643 kb on - strand, within IAI46_00705at 163.643 kb on - strand, within IAI46_00705at 163.697 kb on - strand, within IAI46_00705at 163.744 kb on + strandat 163.744 kb on + strandat 163.744 kb on + strandat 163.756 kb on - strandat 163.784 kb on + strandat 163.784 kb on + strandat 163.784 kb on + strandat 163.784 kb on + strandat 163.785 kb on - strandat 163.807 kb on - strandat 163.815 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.836 kb on + strandat 163.837 kb on - strandat 163.837 kb on - strandat 163.841 kb on + strand, within IAI46_00710at 163.842 kb on - strand, within IAI46_00710at 163.842 kb on - strand, within IAI46_00710at 163.931 kb on - strand, within IAI46_00710at 164.027 kb on + strandat 164.027 kb on + strandat 164.082 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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162,451 + IAI46_00700 0.64 +1.8
162,452 - IAI46_00700 0.64 -1.5
162,452 - IAI46_00700 0.64 -0.1
162,452 - IAI46_00700 0.64 +0.1
162,560 + IAI46_00700 0.68 +0.2
162,640 - IAI46_00700 0.71 +0.6
162,745 + IAI46_00700 0.75 -0.1
162,745 + IAI46_00700 0.75 -0.6
162,746 - IAI46_00700 0.75 -0.7
162,782 + IAI46_00700 0.77 -0.5
162,783 - IAI46_00700 0.77 +0.5
162,804 + IAI46_00700 0.78 +0.7
162,804 + IAI46_00700 0.78 +1.1
162,812 + IAI46_00700 0.78 +0.7
162,812 + IAI46_00700 0.78 -0.6
162,940 + IAI46_00700 0.83 +0.8
163,087 - IAI46_00700 0.89 -1.1
163,093 + IAI46_00700 0.89 +0.8
163,093 + IAI46_00700 0.89 +0.4
163,094 - IAI46_00700 0.89 -1.6
163,094 - IAI46_00700 0.89 +1.0
163,094 - IAI46_00700 0.89 -0.5
163,126 + +0.3
163,127 - -0.5
163,146 + +1.0
163,146 + +0.5
163,146 + -1.0
163,246 + +0.6
163,253 + +0.0
163,253 + +0.1
163,253 + +0.8
163,253 + -0.1
163,253 + +0.0
163,254 - +0.7
163,254 - +0.3
163,375 + -0.1
163,482 + IAI46_00705 0.18 +0.3
163,482 + IAI46_00705 0.18 +0.2
163,483 - IAI46_00705 0.18 -0.1
163,527 + IAI46_00705 0.32 +0.2
163,528 - IAI46_00705 0.32 +1.4
163,528 - IAI46_00705 0.32 +0.4
163,531 + IAI46_00705 0.33 +0.2
163,531 + IAI46_00705 0.33 +1.1
163,531 + IAI46_00705 0.33 -0.5
163,532 - IAI46_00705 0.34 -0.3
163,532 - IAI46_00705 0.34 +0.0
163,622 + IAI46_00705 0.62 -0.0
163,623 - IAI46_00705 0.62 +0.1
163,623 - IAI46_00705 0.62 +0.3
163,623 - IAI46_00705 0.62 +0.7
163,631 + IAI46_00705 0.64 +0.8
163,631 + IAI46_00705 0.64 +0.8
163,632 - IAI46_00705 0.65 +0.6
163,632 - IAI46_00705 0.65 -1.0
163,642 + IAI46_00705 0.68 -0.1
163,643 - IAI46_00705 0.68 +0.2
163,643 - IAI46_00705 0.68 +0.3
163,697 - IAI46_00705 0.85 -0.4
163,744 + -0.1
163,744 + -0.1
163,744 + +0.9
163,756 - +1.5
163,784 + -0.2
163,784 + +0.3
163,784 + +1.5
163,784 + +0.0
163,785 - -1.0
163,807 - -1.0
163,815 + +0.4
163,836 + -0.2
163,836 + +0.8
163,836 + +0.4
163,836 + +0.5
163,836 + +0.2
163,836 + +0.3
163,837 - -0.3
163,837 - -1.5
163,841 + IAI46_00710 0.11 -0.0
163,842 - IAI46_00710 0.12 -0.2
163,842 - IAI46_00710 0.12 +0.5
163,931 - IAI46_00710 0.54 -0.7
164,027 + +0.5
164,027 + +0.9
164,082 + -0.4

Or see this region's nucleotide sequence