Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4254

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4252 and EX28DRAFT_4253 overlap by 1 nucleotidesEX28DRAFT_4253 and EX28DRAFT_4254 are separated by 18 nucleotidesEX28DRAFT_4254 and EX28DRAFT_4255 are separated by 65 nucleotidesEX28DRAFT_4255 and EX28DRAFT_4256 are separated by 0 nucleotidesEX28DRAFT_4256 and EX28DRAFT_4257 are separated by 81 nucleotides EX28DRAFT_4252: EX28DRAFT_4252 - Protein of unknown function (DUF2589), at 59,258 to 59,860 _4252 EX28DRAFT_4253: EX28DRAFT_4253 - Phage-related lysozyme (muraminidase), at 59,860 to 60,309 _4253 EX28DRAFT_4254: EX28DRAFT_4254 - ribonuclease, at 60,328 to 60,810 _4254 EX28DRAFT_4255: EX28DRAFT_4255 - hypothetical protein, at 60,876 to 61,283 _4255 EX28DRAFT_4256: EX28DRAFT_4256 - hypothetical protein, at 61,284 to 61,574 _4256 EX28DRAFT_4257: EX28DRAFT_4257 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 61,656 to 62,261 _4257 Position (kb) 60 61Strain fitness (log2 ratio) -1 0 1at 59.408 kb on - strand, within EX28DRAFT_4252at 59.408 kb on - strand, within EX28DRAFT_4252at 59.426 kb on + strand, within EX28DRAFT_4252at 59.465 kb on + strand, within EX28DRAFT_4252at 59.465 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.467 kb on + strand, within EX28DRAFT_4252at 59.468 kb on - strand, within EX28DRAFT_4252at 59.814 kb on - strandat 59.880 kb on + strandat 59.881 kb on - strandat 60.238 kb on - strand, within EX28DRAFT_4253at 60.296 kb on + strandat 60.304 kb on - strandat 60.307 kb on + strandat 60.426 kb on - strand, within EX28DRAFT_4254at 60.426 kb on - strand, within EX28DRAFT_4254at 60.460 kb on - strand, within EX28DRAFT_4254at 60.508 kb on - strand, within EX28DRAFT_4254at 60.539 kb on - strand, within EX28DRAFT_4254at 60.540 kb on + strand, within EX28DRAFT_4254at 60.541 kb on - strand, within EX28DRAFT_4254at 60.643 kb on + strand, within EX28DRAFT_4254at 60.733 kb on + strand, within EX28DRAFT_4254at 60.775 kb on + strandat 60.776 kb on - strandat 60.776 kb on - strandat 60.776 kb on - strandat 60.776 kb on - strandat 60.783 kb on + strandat 60.784 kb on - strandat 60.808 kb on + strandat 60.809 kb on - strandat 60.809 kb on - strandat 60.830 kb on + strandat 60.830 kb on + strandat 60.875 kb on + strandat 60.875 kb on + strandat 60.876 kb on - strandat 60.876 kb on - strandat 60.889 kb on - strandat 60.998 kb on + strand, within EX28DRAFT_4255at 60.999 kb on - strand, within EX28DRAFT_4255at 60.999 kb on - strand, within EX28DRAFT_4255at 61.010 kb on + strand, within EX28DRAFT_4255at 61.079 kb on - strand, within EX28DRAFT_4255at 61.119 kb on - strand, within EX28DRAFT_4255at 61.136 kb on + strand, within EX28DRAFT_4255at 61.137 kb on - strand, within EX28DRAFT_4255at 61.295 kb on - strandat 61.369 kb on - strand, within EX28DRAFT_4256at 61.662 kb on - strandat 61.669 kb on + strandat 61.740 kb on + strand, within EX28DRAFT_4257at 61.740 kb on + strand, within EX28DRAFT_4257at 61.741 kb on - strand, within EX28DRAFT_4257

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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59,408 - EX28DRAFT_4252 0.25 -0.1
59,408 - EX28DRAFT_4252 0.25 -0.2
59,426 + EX28DRAFT_4252 0.28 -0.2
59,465 + EX28DRAFT_4252 0.34 -0.8
59,465 + EX28DRAFT_4252 0.34 +0.1
59,467 + EX28DRAFT_4252 0.35 +0.0
59,467 + EX28DRAFT_4252 0.35 +0.4
59,467 + EX28DRAFT_4252 0.35 -0.3
59,467 + EX28DRAFT_4252 0.35 -0.4
59,468 - EX28DRAFT_4252 0.35 -0.8
59,814 - -1.2
59,880 + +0.2
59,881 - -0.2
60,238 - EX28DRAFT_4253 0.84 +0.6
60,296 + -0.2
60,304 - +0.2
60,307 + -0.5
60,426 - EX28DRAFT_4254 0.20 +0.6
60,426 - EX28DRAFT_4254 0.20 -0.2
60,460 - EX28DRAFT_4254 0.27 +0.6
60,508 - EX28DRAFT_4254 0.37 -0.0
60,539 - EX28DRAFT_4254 0.44 -0.4
60,540 + EX28DRAFT_4254 0.44 -1.0
60,541 - EX28DRAFT_4254 0.44 +0.9
60,643 + EX28DRAFT_4254 0.65 +0.4
60,733 + EX28DRAFT_4254 0.84 +0.6
60,775 + +0.8
60,776 - +0.5
60,776 - +0.2
60,776 - +0.3
60,776 - -0.7
60,783 + +1.0
60,784 - +0.1
60,808 + +0.1
60,809 - -0.8
60,809 - +0.2
60,830 + -0.4
60,830 + -0.4
60,875 + -0.2
60,875 + -0.1
60,876 - -1.3
60,876 - +0.1
60,889 - -0.3
60,998 + EX28DRAFT_4255 0.30 -0.5
60,999 - EX28DRAFT_4255 0.30 -0.3
60,999 - EX28DRAFT_4255 0.30 -0.1
61,010 + EX28DRAFT_4255 0.33 +0.2
61,079 - EX28DRAFT_4255 0.50 +0.2
61,119 - EX28DRAFT_4255 0.60 -0.1
61,136 + EX28DRAFT_4255 0.64 -0.3
61,137 - EX28DRAFT_4255 0.64 +0.4
61,295 - -0.4
61,369 - EX28DRAFT_4256 0.29 -0.2
61,662 - -0.7
61,669 + -0.2
61,740 + EX28DRAFT_4257 0.14 -0.6
61,740 + EX28DRAFT_4257 0.14 -0.7
61,741 - EX28DRAFT_4257 0.14 +1.7

Or see this region's nucleotide sequence