Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3961 and EX28DRAFT_3962 are separated by 202 nucleotides EX28DRAFT_3962 and EX28DRAFT_3963 overlap by 98 nucleotides
EX28DRAFT_3961: EX28DRAFT_3961 - EamA-like transporter family, at 168,798 to 169,631
_3961
EX28DRAFT_3962: EX28DRAFT_3962 - Multidrug resistance protein, at 169,834 to 170,991
_3962
EX28DRAFT_3963: EX28DRAFT_3963 - Cellulase (glycosyl hydrolase family 5), at 170,894 to 171,982
_3963
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 168.889 kb on - strand, within EX28DRAFT_3961 at 168.937 kb on + strand, within EX28DRAFT_3961 at 168.938 kb on - strand, within EX28DRAFT_3961 at 168.938 kb on - strand, within EX28DRAFT_3961 at 169.000 kb on + strand, within EX28DRAFT_3961 at 169.000 kb on + strand, within EX28DRAFT_3961 at 169.001 kb on - strand, within EX28DRAFT_3961 at 169.011 kb on + strand, within EX28DRAFT_3961 at 169.011 kb on + strand, within EX28DRAFT_3961 at 169.011 kb on + strand, within EX28DRAFT_3961 at 169.012 kb on - strand, within EX28DRAFT_3961 at 169.035 kb on + strand, within EX28DRAFT_3961 at 169.036 kb on - strand, within EX28DRAFT_3961 at 169.036 kb on - strand, within EX28DRAFT_3961 at 169.049 kb on + strand, within EX28DRAFT_3961 at 169.205 kb on - strand, within EX28DRAFT_3961 at 169.205 kb on - strand, within EX28DRAFT_3961 at 169.250 kb on + strand, within EX28DRAFT_3961 at 169.263 kb on - strand, within EX28DRAFT_3961 at 169.312 kb on - strand, within EX28DRAFT_3961 at 169.313 kb on + strand, within EX28DRAFT_3961 at 169.313 kb on + strand, within EX28DRAFT_3961 at 169.314 kb on - strand, within EX28DRAFT_3961 at 169.332 kb on - strand, within EX28DRAFT_3961 at 169.645 kb on + strand at 169.646 kb on + strand at 169.647 kb on - strand at 169.647 kb on - strand at 169.647 kb on - strand at 169.832 kb on + strand at 169.833 kb on - strand at 169.886 kb on - strand at 169.961 kb on - strand, within EX28DRAFT_3962 at 169.972 kb on + strand, within EX28DRAFT_3962 at 170.176 kb on - strand, within EX28DRAFT_3962 at 170.179 kb on + strand, within EX28DRAFT_3962 at 170.180 kb on - strand, within EX28DRAFT_3962 at 170.404 kb on + strand, within EX28DRAFT_3962 at 170.405 kb on - strand, within EX28DRAFT_3962 at 170.406 kb on + strand, within EX28DRAFT_3962 at 170.544 kb on + strand, within EX28DRAFT_3962 at 170.895 kb on + strand at 171.283 kb on + strand, within EX28DRAFT_3963 at 171.332 kb on - strand, within EX28DRAFT_3963 at 171.364 kb on + strand, within EX28DRAFT_3963 at 171.364 kb on + strand, within EX28DRAFT_3963 at 171.365 kb on - strand, within EX28DRAFT_3963 at 171.493 kb on + strand, within EX28DRAFT_3963 at 171.508 kb on - strand, within EX28DRAFT_3963 at 171.518 kb on + strand, within EX28DRAFT_3963 at 171.559 kb on - strand, within EX28DRAFT_3963 at 171.665 kb on - strand, within EX28DRAFT_3963 at 171.666 kb on + strand, within EX28DRAFT_3963 at 171.667 kb on - strand, within EX28DRAFT_3963 at 171.706 kb on - strand, within EX28DRAFT_3963 at 171.722 kb on + strand, within EX28DRAFT_3963 at 171.967 kb on + strand at 171.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 168,889 - EX28DRAFT_3961 0.11 +0.1 168,937 + EX28DRAFT_3961 0.17 -0.9 168,938 - EX28DRAFT_3961 0.17 -0.4 168,938 - EX28DRAFT_3961 0.17 +0.6 169,000 + EX28DRAFT_3961 0.24 -0.5 169,000 + EX28DRAFT_3961 0.24 -1.6 169,001 - EX28DRAFT_3961 0.24 -0.2 169,011 + EX28DRAFT_3961 0.26 -0.2 169,011 + EX28DRAFT_3961 0.26 -2.1 169,011 + EX28DRAFT_3961 0.26 -1.1 169,012 - EX28DRAFT_3961 0.26 -0.1 169,035 + EX28DRAFT_3961 0.28 +1.1 169,036 - EX28DRAFT_3961 0.29 -0.7 169,036 - EX28DRAFT_3961 0.29 +0.1 169,049 + EX28DRAFT_3961 0.30 +0.2 169,205 - EX28DRAFT_3961 0.49 +0.1 169,205 - EX28DRAFT_3961 0.49 -0.7 169,250 + EX28DRAFT_3961 0.54 +1.1 169,263 - EX28DRAFT_3961 0.56 -0.5 169,312 - EX28DRAFT_3961 0.62 -1.2 169,313 + EX28DRAFT_3961 0.62 +0.1 169,313 + EX28DRAFT_3961 0.62 +0.3 169,314 - EX28DRAFT_3961 0.62 -0.5 169,332 - EX28DRAFT_3961 0.64 +0.1 169,645 + +0.4 169,646 + -0.0 169,647 - -0.4 169,647 - +0.6 169,647 - -0.7 169,832 + -0.3 169,833 - -1.0 169,886 - +0.6 169,961 - EX28DRAFT_3962 0.11 -0.1 169,972 + EX28DRAFT_3962 0.12 -0.9 170,176 - EX28DRAFT_3962 0.30 +0.1 170,179 + EX28DRAFT_3962 0.30 +0.2 170,180 - EX28DRAFT_3962 0.30 +0.2 170,404 + EX28DRAFT_3962 0.49 -0.4 170,405 - EX28DRAFT_3962 0.49 -0.6 170,406 + EX28DRAFT_3962 0.49 -1.9 170,544 + EX28DRAFT_3962 0.61 -0.2 170,895 + -0.3 171,283 + EX28DRAFT_3963 0.36 -1.1 171,332 - EX28DRAFT_3963 0.40 -0.2 171,364 + EX28DRAFT_3963 0.43 -0.1 171,364 + EX28DRAFT_3963 0.43 -0.2 171,365 - EX28DRAFT_3963 0.43 +3.4 171,493 + EX28DRAFT_3963 0.55 +0.2 171,508 - EX28DRAFT_3963 0.56 -0.1 171,518 + EX28DRAFT_3963 0.57 +0.7 171,559 - EX28DRAFT_3963 0.61 -0.9 171,665 - EX28DRAFT_3963 0.71 +1.4 171,666 + EX28DRAFT_3963 0.71 +0.3 171,667 - EX28DRAFT_3963 0.71 +2.4 171,706 - EX28DRAFT_3963 0.75 +0.2 171,722 + EX28DRAFT_3963 0.76 +0.5 171,967 + +0.0 171,968 - +0.0
Or see this region's nucleotide sequence