Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2878

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2877 and EX28DRAFT_2878 are separated by 515 nucleotidesEX28DRAFT_2878 and EX28DRAFT_2879 are separated by 65 nucleotides EX28DRAFT_2877: EX28DRAFT_2877 - Predicted Rossmann fold nucleotide-binding protein, at 182,671 to 184,035 _2877 EX28DRAFT_2878: EX28DRAFT_2878 - serine transporter, at 184,551 to 185,846 _2878 EX28DRAFT_2879: EX28DRAFT_2879 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 185,912 to 187,279 _2879 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 183.553 kb on + strand, within EX28DRAFT_2877at 183.576 kb on + strand, within EX28DRAFT_2877at 183.709 kb on + strand, within EX28DRAFT_2877at 183.710 kb on - strand, within EX28DRAFT_2877at 183.717 kb on + strand, within EX28DRAFT_2877at 183.717 kb on + strand, within EX28DRAFT_2877at 183.718 kb on - strand, within EX28DRAFT_2877at 183.910 kb on + strandat 183.911 kb on - strandat 184.006 kb on + strandat 184.006 kb on + strandat 184.007 kb on - strandat 184.007 kb on - strandat 184.034 kb on - strandat 184.120 kb on + strandat 184.120 kb on + strandat 184.121 kb on - strandat 184.121 kb on - strandat 184.248 kb on + strandat 184.248 kb on + strandat 184.249 kb on - strandat 184.249 kb on - strandat 184.333 kb on + strandat 184.408 kb on - strandat 184.408 kb on - strandat 184.547 kb on - strandat 184.664 kb on - strandat 184.664 kb on - strandat 184.715 kb on + strand, within EX28DRAFT_2878at 184.716 kb on - strand, within EX28DRAFT_2878at 184.722 kb on - strand, within EX28DRAFT_2878at 184.864 kb on - strand, within EX28DRAFT_2878at 184.878 kb on + strand, within EX28DRAFT_2878at 184.897 kb on - strand, within EX28DRAFT_2878at 184.897 kb on - strand, within EX28DRAFT_2878at 185.006 kb on + strand, within EX28DRAFT_2878at 185.069 kb on + strand, within EX28DRAFT_2878at 185.265 kb on + strand, within EX28DRAFT_2878at 185.265 kb on + strand, within EX28DRAFT_2878at 185.336 kb on + strand, within EX28DRAFT_2878at 185.411 kb on + strand, within EX28DRAFT_2878at 185.422 kb on - strand, within EX28DRAFT_2878at 185.540 kb on + strand, within EX28DRAFT_2878at 185.747 kb on + strandat 185.747 kb on + strandat 185.748 kb on - strandat 185.785 kb on + strandat 185.786 kb on - strandat 185.786 kb on - strandat 185.786 kb on - strandat 185.789 kb on + strandat 185.790 kb on - strandat 185.832 kb on + strandat 185.833 kb on - strandat 185.833 kb on - strandat 185.922 kb on + strandat 186.037 kb on + strandat 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.057 kb on + strand, within EX28DRAFT_2879at 186.058 kb on - strand, within EX28DRAFT_2879at 186.058 kb on - strand, within EX28DRAFT_2879at 186.094 kb on + strand, within EX28DRAFT_2879at 186.148 kb on + strand, within EX28DRAFT_2879at 186.326 kb on + strand, within EX28DRAFT_2879at 186.327 kb on - strand, within EX28DRAFT_2879at 186.338 kb on + strand, within EX28DRAFT_2879at 186.338 kb on + strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.339 kb on - strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.341 kb on + strand, within EX28DRAFT_2879at 186.342 kb on - strand, within EX28DRAFT_2879at 186.361 kb on + strand, within EX28DRAFT_2879at 186.515 kb on - strand, within EX28DRAFT_2879at 186.646 kb on + strand, within EX28DRAFT_2879

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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183,553 + EX28DRAFT_2877 0.65 -0.1
183,576 + EX28DRAFT_2877 0.66 +0.5
183,709 + EX28DRAFT_2877 0.76 +0.5
183,710 - EX28DRAFT_2877 0.76 +0.6
183,717 + EX28DRAFT_2877 0.77 -0.0
183,717 + EX28DRAFT_2877 0.77 -0.7
183,718 - EX28DRAFT_2877 0.77 -0.1
183,910 + +0.6
183,911 - -0.3
184,006 + -0.8
184,006 + -0.0
184,007 - -0.6
184,007 - +0.4
184,034 - +0.4
184,120 + -0.7
184,120 + +0.2
184,121 - +0.3
184,121 - +0.6
184,248 + -0.1
184,248 + +0.4
184,249 - -1.0
184,249 - +0.5
184,333 + +2.3
184,408 - +0.4
184,408 - +0.1
184,547 - -0.2
184,664 - -0.6
184,664 - -0.5
184,715 + EX28DRAFT_2878 0.13 -0.0
184,716 - EX28DRAFT_2878 0.13 +1.8
184,722 - EX28DRAFT_2878 0.13 +1.3
184,864 - EX28DRAFT_2878 0.24 -0.2
184,878 + EX28DRAFT_2878 0.25 +2.6
184,897 - EX28DRAFT_2878 0.27 -0.2
184,897 - EX28DRAFT_2878 0.27 -0.5
185,006 + EX28DRAFT_2878 0.35 -0.2
185,069 + EX28DRAFT_2878 0.40 -1.4
185,265 + EX28DRAFT_2878 0.55 +0.1
185,265 + EX28DRAFT_2878 0.55 -0.5
185,336 + EX28DRAFT_2878 0.61 -0.5
185,411 + EX28DRAFT_2878 0.66 -0.3
185,422 - EX28DRAFT_2878 0.67 -0.6
185,540 + EX28DRAFT_2878 0.76 -0.4
185,747 + +0.1
185,747 + -0.4
185,748 - -1.8
185,785 + -1.0
185,786 - +0.0
185,786 - -1.2
185,786 - -0.7
185,789 + -0.4
185,790 - -0.5
185,832 + -2.1
185,833 - -0.4
185,833 - +0.9
185,922 + +0.9
186,037 + +0.8
186,057 + EX28DRAFT_2879 0.11 -1.2
186,057 + EX28DRAFT_2879 0.11 +0.3
186,057 + EX28DRAFT_2879 0.11 +1.1
186,057 + EX28DRAFT_2879 0.11 +0.3
186,057 + EX28DRAFT_2879 0.11 +0.2
186,058 - EX28DRAFT_2879 0.11 +0.4
186,058 - EX28DRAFT_2879 0.11 -0.4
186,094 + EX28DRAFT_2879 0.13 -0.2
186,148 + EX28DRAFT_2879 0.17 +0.1
186,326 + EX28DRAFT_2879 0.30 -0.2
186,327 - EX28DRAFT_2879 0.30 +0.5
186,338 + EX28DRAFT_2879 0.31 +0.8
186,338 + EX28DRAFT_2879 0.31 +3.3
186,339 - EX28DRAFT_2879 0.31 +0.4
186,339 - EX28DRAFT_2879 0.31 +2.1
186,339 - EX28DRAFT_2879 0.31 +0.7
186,339 - EX28DRAFT_2879 0.31 +1.2
186,341 + EX28DRAFT_2879 0.31 -0.0
186,341 + EX28DRAFT_2879 0.31 +0.4
186,341 + EX28DRAFT_2879 0.31 +0.1
186,341 + EX28DRAFT_2879 0.31 -0.2
186,342 - EX28DRAFT_2879 0.31 +0.8
186,361 + EX28DRAFT_2879 0.33 -0.1
186,515 - EX28DRAFT_2879 0.44 -0.5
186,646 + EX28DRAFT_2879 0.54 -0.0

Or see this region's nucleotide sequence