Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1421

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1420 and EX28DRAFT_1421 are separated by 285 nucleotidesEX28DRAFT_1421 and EX28DRAFT_1422 are separated by 600 nucleotides EX28DRAFT_1420: EX28DRAFT_1420 - phenylacetate-CoA oxygenase, PaaG subunit, at 1,426,936 to 1,427,865 _1420 EX28DRAFT_1421: EX28DRAFT_1421 - phenylacetic acid degradation protein paaN, at 1,428,151 to 1,430,193 _1421 EX28DRAFT_1422: EX28DRAFT_1422 - Cu2+-containing amine oxidase, at 1,430,794 to 1,433,070 _1422 Position (kb) 1428 1429 1430 1431Strain fitness (log2 ratio) -1 0 1at 1427.572 kb on + strand, within EX28DRAFT_1420at 1427.586 kb on - strand, within EX28DRAFT_1420at 1428.007 kb on - strandat 1428.213 kb on + strandat 1428.214 kb on - strandat 1428.288 kb on + strandat 1428.289 kb on + strandat 1428.447 kb on + strand, within EX28DRAFT_1421at 1428.478 kb on + strand, within EX28DRAFT_1421at 1428.536 kb on + strand, within EX28DRAFT_1421at 1428.537 kb on - strand, within EX28DRAFT_1421at 1429.738 kb on + strand, within EX28DRAFT_1421at 1429.840 kb on + strand, within EX28DRAFT_1421at 1429.841 kb on - strand, within EX28DRAFT_1421at 1429.903 kb on + strand, within EX28DRAFT_1421at 1429.904 kb on - strand, within EX28DRAFT_1421at 1429.966 kb on - strand, within EX28DRAFT_1421at 1429.966 kb on - strand, within EX28DRAFT_1421at 1429.970 kb on - strand, within EX28DRAFT_1421at 1430.046 kb on + strandat 1430.046 kb on + strandat 1430.239 kb on - strandat 1430.561 kb on + strandat 1430.569 kb on + strandat 1430.570 kb on - strandat 1430.570 kb on - strandat 1430.570 kb on - strandat 1430.704 kb on - strandat 1430.824 kb on - strandat 1430.902 kb on - strandat 1431.105 kb on + strand, within EX28DRAFT_1422at 1431.150 kb on - strand, within EX28DRAFT_1422

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,427,572 + EX28DRAFT_1420 0.68 -0.7
1,427,586 - EX28DRAFT_1420 0.70 +0.2
1,428,007 - -0.3
1,428,213 + -0.2
1,428,214 - +0.2
1,428,288 + -0.0
1,428,289 + +0.2
1,428,447 + EX28DRAFT_1421 0.14 -0.1
1,428,478 + EX28DRAFT_1421 0.16 +0.0
1,428,536 + EX28DRAFT_1421 0.19 -0.5
1,428,537 - EX28DRAFT_1421 0.19 -0.5
1,429,738 + EX28DRAFT_1421 0.78 -0.1
1,429,840 + EX28DRAFT_1421 0.83 -0.2
1,429,841 - EX28DRAFT_1421 0.83 -0.7
1,429,903 + EX28DRAFT_1421 0.86 -1.7
1,429,904 - EX28DRAFT_1421 0.86 -0.0
1,429,966 - EX28DRAFT_1421 0.89 +0.3
1,429,966 - EX28DRAFT_1421 0.89 +0.6
1,429,970 - EX28DRAFT_1421 0.89 +0.2
1,430,046 + -1.0
1,430,046 + +0.1
1,430,239 - +0.7
1,430,561 + -0.9
1,430,569 + -0.1
1,430,570 - +0.4
1,430,570 - -0.4
1,430,570 - +0.3
1,430,704 - -0.0
1,430,824 - +1.0
1,430,902 - -0.2
1,431,105 + EX28DRAFT_1422 0.14 -0.3
1,431,150 - EX28DRAFT_1422 0.16 -0.5

Or see this region's nucleotide sequence