Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1375

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1373 and EX28DRAFT_1374 overlap by 4 nucleotidesEX28DRAFT_1374 and EX28DRAFT_1375 overlap by 4 nucleotidesEX28DRAFT_1375 and EX28DRAFT_1376 are separated by 256 nucleotidesEX28DRAFT_1376 and EX28DRAFT_1377 are separated by 1 nucleotides EX28DRAFT_1373: EX28DRAFT_1373 - Predicted NAD/FAD-binding protein, at 1,388,602 to 1,389,861 _1373 EX28DRAFT_1374: EX28DRAFT_1374 - Short-chain dehydrogenases of various substrate specificities, at 1,389,858 to 1,390,577 _1374 EX28DRAFT_1375: EX28DRAFT_1375 - SnoaL-like domain, at 1,390,574 to 1,391,008 _1375 EX28DRAFT_1376: EX28DRAFT_1376 - hypothetical protein, at 1,391,265 to 1,391,462 _1376 EX28DRAFT_1377: EX28DRAFT_1377 - hypothetical protein, at 1,391,464 to 1,392,252 _1377 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2at 1389.575 kb on + strand, within EX28DRAFT_1373at 1389.714 kb on - strand, within EX28DRAFT_1373at 1390.373 kb on - strand, within EX28DRAFT_1374at 1390.635 kb on + strand, within EX28DRAFT_1375at 1390.635 kb on + strand, within EX28DRAFT_1375at 1390.636 kb on - strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.656 kb on + strand, within EX28DRAFT_1375at 1390.659 kb on + strand, within EX28DRAFT_1375at 1390.965 kb on + strandat 1390.966 kb on - strandat 1390.968 kb on + strandat 1390.968 kb on + strandat 1391.206 kb on + strandat 1391.308 kb on + strand, within EX28DRAFT_1376at 1391.400 kb on + strand, within EX28DRAFT_1376at 1391.463 kb on + strandat 1391.482 kb on - strandat 1391.482 kb on - strandat 1391.482 kb on - strandat 1391.509 kb on + strandat 1391.510 kb on - strandat 1391.510 kb on - strandat 1391.587 kb on + strand, within EX28DRAFT_1377at 1391.587 kb on + strand, within EX28DRAFT_1377at 1391.588 kb on - strand, within EX28DRAFT_1377at 1391.695 kb on + strand, within EX28DRAFT_1377at 1391.697 kb on + strand, within EX28DRAFT_1377at 1391.718 kb on + strand, within EX28DRAFT_1377at 1391.735 kb on + strand, within EX28DRAFT_1377at 1391.799 kb on + strand, within EX28DRAFT_1377at 1391.898 kb on + strand, within EX28DRAFT_1377at 1391.898 kb on + strand, within EX28DRAFT_1377at 1391.899 kb on - strand, within EX28DRAFT_1377at 1391.925 kb on + strand, within EX28DRAFT_1377at 1391.925 kb on + strand, within EX28DRAFT_1377at 1391.948 kb on - strand, within EX28DRAFT_1377at 1391.948 kb on - strand, within EX28DRAFT_1377

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,389,575 + EX28DRAFT_1373 0.77 +1.1
1,389,714 - EX28DRAFT_1373 0.88 -0.3
1,390,373 - EX28DRAFT_1374 0.72 +1.4
1,390,635 + EX28DRAFT_1375 0.14 +1.0
1,390,635 + EX28DRAFT_1375 0.14 -0.8
1,390,636 - EX28DRAFT_1375 0.14 -2.1
1,390,656 + EX28DRAFT_1375 0.19 +1.4
1,390,656 + EX28DRAFT_1375 0.19 +0.3
1,390,656 + EX28DRAFT_1375 0.19 -0.1
1,390,656 + EX28DRAFT_1375 0.19 +0.3
1,390,656 + EX28DRAFT_1375 0.19 -0.5
1,390,659 + EX28DRAFT_1375 0.20 +0.2
1,390,965 + -0.1
1,390,966 - +0.0
1,390,968 + +0.6
1,390,968 + +0.1
1,391,206 + -0.7
1,391,308 + EX28DRAFT_1376 0.22 +2.2
1,391,400 + EX28DRAFT_1376 0.68 -0.9
1,391,463 + +0.6
1,391,482 - +0.3
1,391,482 - -0.9
1,391,482 - +0.9
1,391,509 + -0.3
1,391,510 - -0.3
1,391,510 - -0.2
1,391,587 + EX28DRAFT_1377 0.16 -0.3
1,391,587 + EX28DRAFT_1377 0.16 -0.4
1,391,588 - EX28DRAFT_1377 0.16 -0.4
1,391,695 + EX28DRAFT_1377 0.29 +0.7
1,391,697 + EX28DRAFT_1377 0.30 +0.2
1,391,718 + EX28DRAFT_1377 0.32 +1.0
1,391,735 + EX28DRAFT_1377 0.34 +0.4
1,391,799 + EX28DRAFT_1377 0.42 +2.0
1,391,898 + EX28DRAFT_1377 0.55 -1.0
1,391,898 + EX28DRAFT_1377 0.55 +0.4
1,391,899 - EX28DRAFT_1377 0.55 +0.0
1,391,925 + EX28DRAFT_1377 0.58 -2.3
1,391,925 + EX28DRAFT_1377 0.58 +0.2
1,391,948 - EX28DRAFT_1377 0.61 +0.3
1,391,948 - EX28DRAFT_1377 0.61 -1.0

Or see this region's nucleotide sequence