Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0843 and EX28DRAFT_0844 are separated by 9 nucleotides EX28DRAFT_0844 and EX28DRAFT_0845 are separated by 13 nucleotides EX28DRAFT_0845 and EX28DRAFT_0846 overlap by 4 nucleotides
EX28DRAFT_0843: EX28DRAFT_0843 - nitrate ABC transporter, permease protein, at 846,619 to 847,497
_0843
EX28DRAFT_0844: EX28DRAFT_0844 - nitrate transport ATP-binding subunits C and D, at 847,507 to 848,295
_0844
EX28DRAFT_0845: EX28DRAFT_0845 - nitrite reductase [NAD(P)H], large subunit/nitrite reductase [NAD(P)H], small subunit, at 848,309 to 852,295
_0845
EX28DRAFT_0846: EX28DRAFT_0846 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 852,292 to 854,817
_0846
Position (kb) 848
849
850
851
852
853 Strain fitness (log2 ratio) -1
0
1
2 at 847.479 kb on + strand at 848.234 kb on - strand at 848.426 kb on + strand at 849.329 kb on + strand, within EX28DRAFT_0845 at 849.330 kb on - strand, within EX28DRAFT_0845 at 849.617 kb on + strand, within EX28DRAFT_0845 at 849.945 kb on + strand, within EX28DRAFT_0845 at 850.453 kb on + strand, within EX28DRAFT_0845 at 850.454 kb on - strand, within EX28DRAFT_0845 at 850.454 kb on - strand, within EX28DRAFT_0845 at 850.527 kb on - strand, within EX28DRAFT_0845 at 850.783 kb on + strand, within EX28DRAFT_0845 at 850.784 kb on - strand, within EX28DRAFT_0845 at 850.877 kb on - strand, within EX28DRAFT_0845 at 850.979 kb on + strand, within EX28DRAFT_0845 at 850.980 kb on - strand, within EX28DRAFT_0845 at 850.980 kb on - strand, within EX28DRAFT_0845 at 851.023 kb on + strand, within EX28DRAFT_0845 at 851.026 kb on + strand, within EX28DRAFT_0845 at 851.184 kb on - strand, within EX28DRAFT_0845 at 851.184 kb on - strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.709 kb on - strand, within EX28DRAFT_0845 at 851.709 kb on - strand, within EX28DRAFT_0845 at 852.155 kb on + strand at 852.607 kb on + strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.611 kb on - strand, within EX28DRAFT_0846 at 852.701 kb on - strand, within EX28DRAFT_0846 at 852.958 kb on - strand, within EX28DRAFT_0846 at 853.029 kb on + strand, within EX28DRAFT_0846 at 853.031 kb on + strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.043 kb on - strand, within EX28DRAFT_0846 at 853.054 kb on - strand, within EX28DRAFT_0846 at 853.081 kb on + strand, within EX28DRAFT_0846 at 853.081 kb on + strand, within EX28DRAFT_0846
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 847,479 + +1.8 848,234 - +0.7 848,426 + +1.4 849,329 + EX28DRAFT_0845 0.26 -0.3 849,330 - EX28DRAFT_0845 0.26 -0.4 849,617 + EX28DRAFT_0845 0.33 -0.8 849,945 + EX28DRAFT_0845 0.41 +0.2 850,453 + EX28DRAFT_0845 0.54 +0.5 850,454 - EX28DRAFT_0845 0.54 -0.8 850,454 - EX28DRAFT_0845 0.54 +0.3 850,527 - EX28DRAFT_0845 0.56 +0.1 850,783 + EX28DRAFT_0845 0.62 +0.1 850,784 - EX28DRAFT_0845 0.62 -1.0 850,877 - EX28DRAFT_0845 0.64 +0.1 850,979 + EX28DRAFT_0845 0.67 +0.0 850,980 - EX28DRAFT_0845 0.67 -1.2 850,980 - EX28DRAFT_0845 0.67 -0.3 851,023 + EX28DRAFT_0845 0.68 +1.2 851,026 + EX28DRAFT_0845 0.68 +0.1 851,184 - EX28DRAFT_0845 0.72 -0.8 851,184 - EX28DRAFT_0845 0.72 -1.4 851,603 + EX28DRAFT_0845 0.83 +1.0 851,603 + EX28DRAFT_0845 0.83 +0.6 851,603 + EX28DRAFT_0845 0.83 +0.7 851,709 - EX28DRAFT_0845 0.85 -0.7 851,709 - EX28DRAFT_0845 0.85 -0.1 852,155 + -0.0 852,607 + EX28DRAFT_0846 0.12 -0.1 852,608 - EX28DRAFT_0846 0.13 +0.3 852,608 - EX28DRAFT_0846 0.13 -0.3 852,608 - EX28DRAFT_0846 0.13 -0.1 852,608 - EX28DRAFT_0846 0.13 -1.5 852,608 - EX28DRAFT_0846 0.13 -0.9 852,611 - EX28DRAFT_0846 0.13 +0.2 852,701 - EX28DRAFT_0846 0.16 -0.3 852,958 - EX28DRAFT_0846 0.26 +0.1 853,029 + EX28DRAFT_0846 0.29 -0.4 853,031 + EX28DRAFT_0846 0.29 -0.2 853,032 - EX28DRAFT_0846 0.29 +0.9 853,032 - EX28DRAFT_0846 0.29 -0.2 853,032 - EX28DRAFT_0846 0.29 -0.0 853,043 - EX28DRAFT_0846 0.30 -1.4 853,054 - EX28DRAFT_0846 0.30 +0.3 853,081 + EX28DRAFT_0846 0.31 +0.4 853,081 + EX28DRAFT_0846 0.31 +1.2
Or see this region's nucleotide sequence