Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0644

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0643 and EX28DRAFT_0644 are separated by 425 nucleotidesEX28DRAFT_0644 and EX28DRAFT_0645 are separated by 33 nucleotides EX28DRAFT_0643: EX28DRAFT_0643 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 636,908 to 638,029 _0643 EX28DRAFT_0644: EX28DRAFT_0644 - yecA family protein, at 638,455 to 639,123 _0644 EX28DRAFT_0645: EX28DRAFT_0645 - aromatic amino acid transport protein, at 639,157 to 640,368 _0645 Position (kb) 638 639 640Strain fitness (log2 ratio) -3 -2 -1 0 1at 637.686 kb on + strand, within EX28DRAFT_0643at 637.686 kb on + strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.761 kb on - strand, within EX28DRAFT_0643at 637.855 kb on + strand, within EX28DRAFT_0643at 637.856 kb on - strand, within EX28DRAFT_0643at 637.859 kb on - strand, within EX28DRAFT_0643at 637.902 kb on + strand, within EX28DRAFT_0643at 638.030 kb on + strandat 638.030 kb on + strandat 638.030 kb on + strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.033 kb on + strandat 638.033 kb on + strandat 638.033 kb on + strandat 638.033 kb on + strandat 638.034 kb on - strandat 638.034 kb on - strandat 638.034 kb on - strandat 638.034 kb on - strandat 638.069 kb on + strandat 638.128 kb on - strandat 638.133 kb on - strandat 638.140 kb on + strandat 638.141 kb on - strandat 638.159 kb on - strandat 638.159 kb on - strandat 638.260 kb on + strandat 638.260 kb on + strandat 638.260 kb on + strandat 638.338 kb on + strandat 638.339 kb on - strandat 638.339 kb on - strandat 638.339 kb on - strandat 638.414 kb on + strandat 638.414 kb on + strandat 638.414 kb on + strandat 638.415 kb on - strandat 638.415 kb on - strandat 638.448 kb on - strandat 638.515 kb on + strandat 638.642 kb on - strand, within EX28DRAFT_0644at 638.642 kb on - strand, within EX28DRAFT_0644at 638.698 kb on - strand, within EX28DRAFT_0644at 638.703 kb on + strand, within EX28DRAFT_0644at 638.703 kb on + strand, within EX28DRAFT_0644at 638.767 kb on - strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.789 kb on - strand, within EX28DRAFT_0644at 638.813 kb on - strand, within EX28DRAFT_0644at 638.885 kb on + strand, within EX28DRAFT_0644at 638.885 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.990 kb on + strand, within EX28DRAFT_0644at 638.992 kb on + strand, within EX28DRAFT_0644at 639.103 kb on - strandat 639.103 kb on - strandat 639.124 kb on + strandat 639.155 kb on - strandat 639.159 kb on - strandat 639.208 kb on - strandat 639.480 kb on - strand, within EX28DRAFT_0645at 639.570 kb on + strand, within EX28DRAFT_0645at 639.750 kb on + strand, within EX28DRAFT_0645at 639.763 kb on - strand, within EX28DRAFT_0645at 639.862 kb on - strand, within EX28DRAFT_0645at 639.862 kb on - strand, within EX28DRAFT_0645at 640.076 kb on + strand, within EX28DRAFT_0645at 640.094 kb on + strand, within EX28DRAFT_0645at 640.114 kb on - strand, within EX28DRAFT_0645

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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637,686 + EX28DRAFT_0643 0.69 +0.0
637,686 + EX28DRAFT_0643 0.69 +0.1
637,687 - EX28DRAFT_0643 0.69 +0.0
637,687 - EX28DRAFT_0643 0.69 -1.8
637,687 - EX28DRAFT_0643 0.69 -0.1
637,761 - EX28DRAFT_0643 0.76 -0.3
637,855 + EX28DRAFT_0643 0.84 -0.2
637,856 - EX28DRAFT_0643 0.84 -0.2
637,859 - EX28DRAFT_0643 0.85 +0.2
637,902 + EX28DRAFT_0643 0.89 +0.3
638,030 + -0.5
638,030 + +1.0
638,030 + -0.0
638,031 - -0.3
638,031 - -0.7
638,031 - +0.1
638,031 - -1.8
638,031 - +0.7
638,033 + +0.5
638,033 + -0.1
638,033 + -0.3
638,033 + -0.5
638,034 - -0.1
638,034 - +0.3
638,034 - -0.5
638,034 - -0.1
638,069 + +0.1
638,128 - +0.8
638,133 - -0.7
638,140 + -0.8
638,141 - -0.1
638,159 - +1.4
638,159 - +1.1
638,260 + -1.5
638,260 + -0.7
638,260 + +1.5
638,338 + -0.0
638,339 - +0.3
638,339 - +0.6
638,339 - +0.1
638,414 + +0.9
638,414 + +0.9
638,414 + +1.0
638,415 - -3.0
638,415 - +0.3
638,448 - -0.1
638,515 + +0.1
638,642 - EX28DRAFT_0644 0.28 +0.3
638,642 - EX28DRAFT_0644 0.28 -0.6
638,698 - EX28DRAFT_0644 0.36 -0.5
638,703 + EX28DRAFT_0644 0.37 +0.3
638,703 + EX28DRAFT_0644 0.37 +0.0
638,767 - EX28DRAFT_0644 0.47 -0.2
638,788 + EX28DRAFT_0644 0.50 -0.4
638,788 + EX28DRAFT_0644 0.50 -0.1
638,788 + EX28DRAFT_0644 0.50 -0.7
638,788 + EX28DRAFT_0644 0.50 -0.4
638,788 + EX28DRAFT_0644 0.50 -0.8
638,788 + EX28DRAFT_0644 0.50 +0.5
638,788 + EX28DRAFT_0644 0.50 -0.4
638,788 + EX28DRAFT_0644 0.50 +0.0
638,788 + EX28DRAFT_0644 0.50 +0.2
638,788 + EX28DRAFT_0644 0.50 +1.0
638,789 - EX28DRAFT_0644 0.50 -0.3
638,813 - EX28DRAFT_0644 0.54 +0.0
638,885 + EX28DRAFT_0644 0.64 -0.3
638,885 + EX28DRAFT_0644 0.64 -0.9
638,947 + EX28DRAFT_0644 0.74 +0.3
638,947 + EX28DRAFT_0644 0.74 +0.1
638,947 + EX28DRAFT_0644 0.74 +0.5
638,947 + EX28DRAFT_0644 0.74 -0.1
638,948 - EX28DRAFT_0644 0.74 -0.5
638,948 - EX28DRAFT_0644 0.74 -1.3
638,948 - EX28DRAFT_0644 0.74 -0.2
638,990 + EX28DRAFT_0644 0.80 +0.1
638,992 + EX28DRAFT_0644 0.80 -0.2
639,103 - +0.8
639,103 - -1.4
639,124 + -0.5
639,155 - +1.0
639,159 - -0.7
639,208 - -0.2
639,480 - EX28DRAFT_0645 0.27 +0.4
639,570 + EX28DRAFT_0645 0.34 -0.7
639,750 + EX28DRAFT_0645 0.49 +0.4
639,763 - EX28DRAFT_0645 0.50 +0.0
639,862 - EX28DRAFT_0645 0.58 +0.4
639,862 - EX28DRAFT_0645 0.58 -1.0
640,076 + EX28DRAFT_0645 0.76 -1.1
640,094 + EX28DRAFT_0645 0.77 -0.3
640,114 - EX28DRAFT_0645 0.79 +0.3

Or see this region's nucleotide sequence