Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23730

Experiment: carbonsource_succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07125 and AMB_RS07130 overlap by 29 nucleotidesAMB_RS07130 and AMB_RS23730 are separated by 59 nucleotidesAMB_RS23730 and AMB_RS07145 are separated by 2 nucleotides AMB_RS07125: AMB_RS07125 - cytochrome CBB3, at 1,531,549 to 1,533,186 _RS07125 AMB_RS07130: AMB_RS07130 - alpha/beta hydrolase, at 1,533,158 to 1,533,850 _RS07130 AMB_RS23730: AMB_RS23730 - PAS domain S-box protein, at 1,533,910 to 1,536,231 _RS23730 AMB_RS07145: AMB_RS07145 - two-component sensor histidine kinase, at 1,536,234 to 1,537,742 _RS07145 Position (kb) 1533 1534 1535 1536 1537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1533.139 kb on + strandat 1533.139 kb on + strandat 1533.139 kb on + strandat 1533.140 kb on - strandat 1533.140 kb on - strandat 1533.140 kb on - strandat 1533.140 kb on - strandat 1533.163 kb on + strandat 1533.163 kb on + strandat 1533.163 kb on + strandat 1533.164 kb on - strandat 1533.285 kb on + strand, within AMB_RS07130at 1533.429 kb on + strand, within AMB_RS07130at 1533.430 kb on - strand, within AMB_RS07130at 1533.430 kb on - strand, within AMB_RS07130at 1533.594 kb on + strand, within AMB_RS07130at 1533.595 kb on - strand, within AMB_RS07130at 1533.759 kb on + strand, within AMB_RS07130at 1533.810 kb on - strandat 1533.810 kb on - strandat 1533.885 kb on + strandat 1533.934 kb on - strandat 1534.264 kb on + strand, within AMB_RS23730at 1534.264 kb on + strand, within AMB_RS23730at 1534.264 kb on + strand, within AMB_RS23730at 1534.264 kb on + strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.357 kb on + strand, within AMB_RS23730at 1534.358 kb on - strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.511 kb on - strand, within AMB_RS23730at 1534.528 kb on + strand, within AMB_RS23730at 1534.528 kb on + strand, within AMB_RS23730at 1534.528 kb on + strand, within AMB_RS23730at 1534.529 kb on - strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.571 kb on - strand, within AMB_RS23730at 1534.619 kb on - strand, within AMB_RS23730at 1534.619 kb on - strand, within AMB_RS23730at 1534.703 kb on - strand, within AMB_RS23730at 1534.855 kb on + strand, within AMB_RS23730at 1534.856 kb on - strand, within AMB_RS23730at 1534.906 kb on + strand, within AMB_RS23730at 1534.906 kb on + strand, within AMB_RS23730at 1534.907 kb on - strand, within AMB_RS23730at 1534.907 kb on - strand, within AMB_RS23730at 1534.907 kb on - strand, within AMB_RS23730at 1534.955 kb on - strand, within AMB_RS23730at 1534.955 kb on - strand, within AMB_RS23730at 1534.955 kb on - strand, within AMB_RS23730at 1534.955 kb on - strand, within AMB_RS23730at 1534.955 kb on - strand, within AMB_RS23730at 1535.119 kb on + strand, within AMB_RS23730at 1535.248 kb on + strand, within AMB_RS23730at 1535.248 kb on + strand, within AMB_RS23730at 1535.248 kb on + strand, within AMB_RS23730at 1535.249 kb on - strand, within AMB_RS23730at 1535.249 kb on - strand, within AMB_RS23730at 1535.249 kb on - strand, within AMB_RS23730at 1535.459 kb on - strand, within AMB_RS23730at 1535.459 kb on - strand, within AMB_RS23730at 1535.459 kb on - strand, within AMB_RS23730at 1535.484 kb on + strand, within AMB_RS23730at 1535.569 kb on + strand, within AMB_RS23730at 1535.570 kb on - strand, within AMB_RS23730at 1535.570 kb on - strand, within AMB_RS23730at 1535.617 kb on + strand, within AMB_RS23730at 1535.617 kb on + strand, within AMB_RS23730at 1535.617 kb on + strand, within AMB_RS23730at 1535.618 kb on - strand, within AMB_RS23730at 1535.618 kb on - strand, within AMB_RS23730at 1535.618 kb on - strand, within AMB_RS23730at 1535.944 kb on + strand, within AMB_RS23730at 1536.050 kb on - strandat 1536.391 kb on + strand, within AMB_RS07145at 1536.433 kb on + strand, within AMB_RS07145at 1536.433 kb on + strand, within AMB_RS07145at 1536.433 kb on + strand, within AMB_RS07145at 1536.433 kb on + strand, within AMB_RS07145at 1536.434 kb on - strand, within AMB_RS07145at 1536.434 kb on - strand, within AMB_RS07145at 1536.434 kb on - strand, within AMB_RS07145at 1536.434 kb on - strand, within AMB_RS07145at 1536.434 kb on - strand, within AMB_RS07145at 1536.434 kb on - strand, within AMB_RS07145at 1536.547 kb on + strand, within AMB_RS07145at 1536.586 kb on + strand, within AMB_RS07145at 1536.586 kb on + strand, within AMB_RS07145at 1536.586 kb on + strand, within AMB_RS07145at 1536.586 kb on + strand, within AMB_RS07145at 1536.586 kb on + strand, within AMB_RS07145at 1536.587 kb on - strand, within AMB_RS07145at 1536.587 kb on - strand, within AMB_RS07145at 1536.745 kb on + strand, within AMB_RS07145at 1536.808 kb on + strand, within AMB_RS07145at 1536.808 kb on + strand, within AMB_RS07145at 1536.808 kb on + strand, within AMB_RS07145at 1536.809 kb on - strand, within AMB_RS07145at 1536.809 kb on - strand, within AMB_RS07145at 1536.809 kb on - strand, within AMB_RS07145at 1536.809 kb on - strand, within AMB_RS07145at 1536.809 kb on - strand, within AMB_RS07145at 1536.841 kb on + strand, within AMB_RS07145at 1536.841 kb on + strand, within AMB_RS07145at 1536.841 kb on + strand, within AMB_RS07145at 1536.842 kb on - strand, within AMB_RS07145at 1536.842 kb on - strand, within AMB_RS07145at 1536.913 kb on + strand, within AMB_RS07145at 1536.913 kb on + strand, within AMB_RS07145at 1536.913 kb on + strand, within AMB_RS07145at 1536.914 kb on - strand, within AMB_RS07145at 1536.989 kb on + strand, within AMB_RS07145at 1536.990 kb on - strand, within AMB_RS07145at 1536.990 kb on - strand, within AMB_RS07145at 1537.075 kb on + strand, within AMB_RS07145at 1537.076 kb on - strand, within AMB_RS07145

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Per-strain Table

Position Strand Gene LocusTag Fraction carbonsource_succinate
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1,533,139 + -0.3
1,533,139 + -0.3
1,533,139 + -2.4
1,533,140 - -0.4
1,533,140 - -0.1
1,533,140 - +0.1
1,533,140 - +0.0
1,533,163 + -0.4
1,533,163 + -0.8
1,533,163 + -1.7
1,533,164 - +0.5
1,533,285 + AMB_RS07130 0.18 -3.3
1,533,429 + AMB_RS07130 0.39 -0.5
1,533,430 - AMB_RS07130 0.39 -0.1
1,533,430 - AMB_RS07130 0.39 +0.1
1,533,594 + AMB_RS07130 0.63 -0.2
1,533,595 - AMB_RS07130 0.63 +0.2
1,533,759 + AMB_RS07130 0.87 -0.5
1,533,810 - +0.2
1,533,810 - -0.1
1,533,885 + -1.4
1,533,934 - -0.3
1,534,264 + AMB_RS23730 0.15 -0.3
1,534,264 + AMB_RS23730 0.15 -0.3
1,534,264 + AMB_RS23730 0.15 -0.8
1,534,264 + AMB_RS23730 0.15 -0.2
1,534,265 - AMB_RS23730 0.15 -1.1
1,534,265 - AMB_RS23730 0.15 -0.7
1,534,265 - AMB_RS23730 0.15 -0.7
1,534,265 - AMB_RS23730 0.15 -0.4
1,534,265 - AMB_RS23730 0.15 -0.1
1,534,357 + AMB_RS23730 0.19 -0.4
1,534,358 - AMB_RS23730 0.19 +0.3
1,534,459 + AMB_RS23730 0.24 -0.1
1,534,459 + AMB_RS23730 0.24 +0.6
1,534,459 + AMB_RS23730 0.24 +0.0
1,534,459 + AMB_RS23730 0.24 -0.9
1,534,459 + AMB_RS23730 0.24 -0.5
1,534,459 + AMB_RS23730 0.24 -2.1
1,534,460 - AMB_RS23730 0.24 -1.6
1,534,460 - AMB_RS23730 0.24 +0.0
1,534,460 - AMB_RS23730 0.24 +0.5
1,534,460 - AMB_RS23730 0.24 +0.1
1,534,460 - AMB_RS23730 0.24 +0.2
1,534,460 - AMB_RS23730 0.24 -0.0
1,534,460 - AMB_RS23730 0.24 +0.1
1,534,460 - AMB_RS23730 0.24 -2.1
1,534,460 - AMB_RS23730 0.24 -0.2
1,534,511 - AMB_RS23730 0.26 -1.4
1,534,528 + AMB_RS23730 0.27 -0.4
1,534,528 + AMB_RS23730 0.27 +1.7
1,534,528 + AMB_RS23730 0.27 +0.6
1,534,529 - AMB_RS23730 0.27 +0.2
1,534,570 + AMB_RS23730 0.28 +0.6
1,534,570 + AMB_RS23730 0.28 +0.1
1,534,570 + AMB_RS23730 0.28 -1.4
1,534,570 + AMB_RS23730 0.28 -0.0
1,534,571 - AMB_RS23730 0.28 +0.4
1,534,619 - AMB_RS23730 0.31 -0.1
1,534,619 - AMB_RS23730 0.31 -1.1
1,534,703 - AMB_RS23730 0.34 -0.1
1,534,855 + AMB_RS23730 0.41 +0.2
1,534,856 - AMB_RS23730 0.41 -0.2
1,534,906 + AMB_RS23730 0.43 -0.9
1,534,906 + AMB_RS23730 0.43 +1.3
1,534,907 - AMB_RS23730 0.43 -0.2
1,534,907 - AMB_RS23730 0.43 -0.1
1,534,907 - AMB_RS23730 0.43 +0.1
1,534,955 - AMB_RS23730 0.45 +0.3
1,534,955 - AMB_RS23730 0.45 -1.1
1,534,955 - AMB_RS23730 0.45 +0.4
1,534,955 - AMB_RS23730 0.45 -0.8
1,534,955 - AMB_RS23730 0.45 +0.2
1,535,119 + AMB_RS23730 0.52 +0.6
1,535,248 + AMB_RS23730 0.58 -0.3
1,535,248 + AMB_RS23730 0.58 -0.2
1,535,248 + AMB_RS23730 0.58 -1.2
1,535,249 - AMB_RS23730 0.58 +0.0
1,535,249 - AMB_RS23730 0.58 -1.8
1,535,249 - AMB_RS23730 0.58 +0.2
1,535,459 - AMB_RS23730 0.67 -0.3
1,535,459 - AMB_RS23730 0.67 -1.4
1,535,459 - AMB_RS23730 0.67 -0.6
1,535,484 + AMB_RS23730 0.68 -0.2
1,535,569 + AMB_RS23730 0.71 -0.2
1,535,570 - AMB_RS23730 0.71 -0.2
1,535,570 - AMB_RS23730 0.71 -0.5
1,535,617 + AMB_RS23730 0.74 -0.0
1,535,617 + AMB_RS23730 0.74 -1.4
1,535,617 + AMB_RS23730 0.74 +1.2
1,535,618 - AMB_RS23730 0.74 +0.2
1,535,618 - AMB_RS23730 0.74 +0.2
1,535,618 - AMB_RS23730 0.74 +0.0
1,535,944 + AMB_RS23730 0.88 +0.0
1,536,050 - -0.3
1,536,391 + AMB_RS07145 0.10 +0.0
1,536,433 + AMB_RS07145 0.13 -0.4
1,536,433 + AMB_RS07145 0.13 -0.8
1,536,433 + AMB_RS07145 0.13 -0.3
1,536,433 + AMB_RS07145 0.13 +0.3
1,536,434 - AMB_RS07145 0.13 -2.8
1,536,434 - AMB_RS07145 0.13 -1.8
1,536,434 - AMB_RS07145 0.13 +0.2
1,536,434 - AMB_RS07145 0.13 +0.2
1,536,434 - AMB_RS07145 0.13 -0.1
1,536,434 - AMB_RS07145 0.13 +0.1
1,536,547 + AMB_RS07145 0.21 +0.0
1,536,586 + AMB_RS07145 0.23 -1.2
1,536,586 + AMB_RS07145 0.23 -0.2
1,536,586 + AMB_RS07145 0.23 +0.5
1,536,586 + AMB_RS07145 0.23 -0.7
1,536,586 + AMB_RS07145 0.23 +0.2
1,536,587 - AMB_RS07145 0.23 +1.8
1,536,587 - AMB_RS07145 0.23 +0.7
1,536,745 + AMB_RS07145 0.34 -0.6
1,536,808 + AMB_RS07145 0.38 +1.3
1,536,808 + AMB_RS07145 0.38 -0.6
1,536,808 + AMB_RS07145 0.38 +0.4
1,536,809 - AMB_RS07145 0.38 -1.1
1,536,809 - AMB_RS07145 0.38 -0.2
1,536,809 - AMB_RS07145 0.38 -0.2
1,536,809 - AMB_RS07145 0.38 +0.0
1,536,809 - AMB_RS07145 0.38 -0.2
1,536,841 + AMB_RS07145 0.40 -0.1
1,536,841 + AMB_RS07145 0.40 +1.0
1,536,841 + AMB_RS07145 0.40 +0.2
1,536,842 - AMB_RS07145 0.40 -0.1
1,536,842 - AMB_RS07145 0.40 +1.9
1,536,913 + AMB_RS07145 0.45 +0.9
1,536,913 + AMB_RS07145 0.45 +1.5
1,536,913 + AMB_RS07145 0.45 +0.3
1,536,914 - AMB_RS07145 0.45 -1.0
1,536,989 + AMB_RS07145 0.50 -0.1
1,536,990 - AMB_RS07145 0.50 -0.5
1,536,990 - AMB_RS07145 0.50 -0.5
1,537,075 + AMB_RS07145 0.56 -0.8
1,537,076 - AMB_RS07145 0.56 -0.5

Or see this region's nucleotide sequence